Input parameters:

  Query = AT3G15880.1 (Len=1135)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G15880.1, Len=1135):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLTLTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDK 160 
WD40-rpts                                                                                      

Query      161 LQFPSLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240 
WD40-rpts                                                                                      

Query      241 PTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQTADSESVLKRPRPFGISDGVN 320 
WD40-rpts                                                                       (______________

Query      321 NLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILSQGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKV 400 
WD40-rpts      ___WD 1________________)  (_________________WD 2_________________)              

Query      401 WDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQQLC 480 
WD40-rpts        (____________________WD 3___________________)      (__________________WD 4____

Query      481 VVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAY 560 
WD40-rpts      _____________)   (__________________WD 5_________________)   (__________________

Query      561 CADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLGLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAE 640 
WD40-rpts      _WD 6__________________)   (_________________WD 7_________________)(____________

Query      641 GGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGMSLSMG 720 
WD40-rpts      _______WD 8___________________)(_________________WD 9________________)   (______

Query      721 ERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKTWKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENA 800 
WD40-rpts      _______________WD10____________________)   (___________________WD11_____________

Query      801 AHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 880 
WD40-rpts      _____)                      (___________________WD12___________________)   (____

Query      881 TFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSMDG 960 
WD40-rpts      _____________WD13_________________)   (_________________WD14________________)   

Query      961 WEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAA 1040
WD40-rpts           (__________________WD15_________________)  (__________________WD16_________

Query     1041 FDDGSVSILTATTLQLKCRIGPNSYLPSNPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGA 1120
WD40-rpts      _________)(_______________________WD17_______________________)                  

Query     1121 GPSVSSAPGSDQQPR 1135
WD40-rpts                     

17 WD40-repeats found in QUERY=AT3G15880.1 (Len=1135):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   306-344      3.54  261.02  0.01875       12.5%      2.74
  WD 2:  Seg  5   347-386      6.88  398.92  0.00026       22.5%     56.45
  WD 3:  Seg 10   403-447      7.78  436.20  8.2e-05       25.0%     48.84
  WD 4:  Seg 13   454-494      7.16  410.49  0.00018       35.0%     51.58
  WD 5:  Seg 17   498-538      7.51  424.75  0.00012       35.0%     57.48
  WD 6:  Seg 21   542-584      6.44  380.75  0.00046       22.5%     54.85
  WD 7:  Seg 25   588-627      7.10  407.78  0.00020       25.0%     57.82
  WD 8:  Seg 29   628-671      6.60  387.32  0.00037       15.0%     56.64
  WD 9:  Seg 33   672-710      7.03  405.05  0.00022       22.5%     36.88
  WD10:  Seg 37   714-760      5.24  331.01  0.00215       15.0%     40.21
  WD11:  Seg 41   764-806      6.52  383.85  0.00042       22.5%     56.55
  WD12:  Seg 47   829-872      4.14  285.48  0.00882       15.0%     51.97
  WD13:  Seg 51   876-915      7.34  417.84  0.00015       22.5%     58.72
  WD14:  Seg 55   919-957      8.95  484.51  1.8e-05       35.0%     58.55
  WD15:  Seg 59   966-1006     3.97  278.67  0.01088       17.5%     46.54
  WD16:  Seg 63  1009-1050     8.07  448.14  5.7e-05       17.5%     56.73
  WD17:  Seg 67  1051-1102     3.67  266.45  0.01587       22.5%     33.29

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  306-344    -VL----K-----RP--RPF-----G-I----SDGV---NNLPV--NV-----------LPV-TY--------PGQSH----AHATYSTD
   WD 2  347-386    -PK----N-----VS--RIL-----S-Q----GSAI---KSMDF--HP-----------VQQTML--------LVGTN----LGDIAIWE
   WD 3  403-447    LAT----CTVNLQAS--LAS-----E-Y----TAAV---NRVVW--SP-----------DGG-LL--------GVAYS----KHIVHIYS
   WD 4  454-494    -LR----N-----HL--EID-----A-H----AGNV---NDLAF--SQ-----------PNQ-QL------CVVTCGE----DKTIKVWD
   WD 5  498-538    -GN----K-----LH--TFE-----G-H----EAPV---YSVCPHQKE-----------NIQ-FI--------FSTAV----DGKIKAWL
   WD 6  542-584    -MG----S-----RV--DYD-----A-P----GRSC---TSMAY--CA-----------DGT-RL--------FSCGTSKEGESFIVEWN
   WD 7  588-627    -GA----V-----KR--TYL-----GLG----KRSV---GVVQF--DT-----------MKN-KF--------LVAGD----EFQVKFWD
   WD 8  628-671    MDSVDLLS-----ST--AAE-----G-G----LPSS---PCLRI--NK-----------EGT-LL--------AVSTT----DNGIKILA
   WD 9  672-710    NAE----G-----SR--ILH-----S-M----ANRG---LDSSR--AP-----------PGS--V--------AKGPI----VGTFGTPN
   WD10  714-760    -GM----S-----LS--MGE-----R-S----GPVA---SVTGL--NG-----------DNR-SLPDVKPRIADDAEK----SKTWKLTE
   WD11  764-806    -RS----Q-----LR--TLR-----L-PDTLLPARV---VKLIY--TN-----------SGG-AI--------LALAE----NAAHKLWK
   WD12  829-872    PSS----G-----VL--MTNDTREGN-K----EDVV---PCFAL--SK-----------NDS-YV--------MSAS-----GGKISLFN
   WD13  876-915    -FK----T-----MT--TFM-----A-P----PPAA---TSLAF--HP----------QDNN-II--------AIGMD----DSSIQIYN
   WD14  919-957    -DE----V-----KS--KLK-----G-H----QKRV---TGLAF--SN-----------VLN-VL--------VSSGA----DSQLCVWS
   WD15  966-1006   -SK----Q-----IQ--IPS-----G-H----SPNPLAHTRVQF--HQ-----------DQI-HV--------LVVH-----ASQLAIYE
   WD16 1009-1050   KLE----N-----MKQWIPK-----E-S----SGSV---TDAVY--SC-----------DSQ-SI--------YAAFD----DGSVSILT
   WD17 1051-1102   ATT----L----QLK--CRI-----G-P----NSYL---PSNPS--SRVYPATVAAHPSEPN-QF--------AVGLT----DGGVHVIE

   WD40 Template    TGE----C-----LR--TLS-----G-H----TSGV---TSVSF--SP-----------DGK-RL--------VSGSE----DGTIKVWD