Input parameters:

  Query = AT3G15880.2 (Len=1137)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G15880.2, Len=1137):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLTLTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDK 160 
WD40-rpts                                                                                      

Query      161 LQFPSLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240 
WD40-rpts                                                                                      

Query      241 PTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQTADSESVLKRPRPFGISDGVN 320 
WD40-rpts                                                                                      

Query      321 NLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILSQGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKV 400 
WD40-rpts                                (_________________WD 1_________________)              

Query      401 WDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQQLC 480 
WD40-rpts        (____________________WD 2___________________)        (_________________WD 3___

Query      481 VVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAY 560 
WD40-rpts      _____________)   (__________________WD 4_________________)   (__________________

Query      561 CADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLGLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAE 640 
WD40-rpts      _WD 5__________________)   (_________________WD 6_________________)(____________

Query      641 GGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGMSLSMG 720 
WD40-rpts      _______WD 7___________________)(_________________WD 8________________)   (______

Query      721 ERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKTWKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENA 800 
WD40-rpts      _______________WD 9____________________)   (___________________WD10_____________

Query      801 AHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 880 
WD40-rpts      _____)                      (___________________WD11___________________)   (____

Query      881 TFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSMDG 960 
WD40-rpts      _____________WD12_________________)   (_________________WD13________________)   

Query      961 WEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAA 1040
WD40-rpts           (__________________WD14_________________)  (__________________WD15_________

Query     1041 FDDGSVSILTATTLQLKCRIGPNSYLPSNPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGA 1120
WD40-rpts      _________)          (__________________WD16__________________)                  

Query     1121 GPSVSSAPGSDQQPSDS 1137
WD40-rpts                       

16 WD40-repeats found in QUERY=AT3G15880.2 (Len=1137):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   347-386      6.33  376.22  0.00053       22.5%     54.44
  WD 2:  Seg 11   403-447      7.38  419.31  0.00014       25.0%     47.87
  WD 3:  Seg 15   456-494      7.17  411.03  0.00018       35.0%     45.79
  WD 4:  Seg 18   498-538      7.37  419.13  0.00014       35.0%     55.88
  WD 5:  Seg 22   542-584      6.20  370.87  0.00062       22.5%     54.96
  WD 6:  Seg 26   588-627      6.85  397.52  0.00027       25.0%     56.96
  WD 7:  Seg 30   628-671      6.46  381.57  0.00045       15.0%     56.16
  WD 8:  Seg 34   672-710      6.87  398.43  0.00027       22.5%     43.56
  WD 9:  Seg 38   714-760      5.08  324.52  0.00263       15.0%     35.91
  WD10:  Seg 42   764-806      6.19  370.40  0.00063       22.5%     56.27
  WD11:  Seg 48   829-872      3.75  269.56  0.01441       15.0%     52.88
  WD12:  Seg 52   876-915      7.04  405.31  0.00021       22.5%     57.95
  WD13:  Seg 56   919-957      8.73  475.25  2.4e-05       35.0%     58.04
  WD14:  Seg 60   966-1006     3.75  269.41  0.01448       17.5%     45.25
  WD15:  Seg 64  1009-1050     7.72  433.36  9.0e-05       17.5%     57.50
  WD16:  Seg 68  1061-1102     3.18  245.92  0.02980       20.0%     35.53

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  347-386    -PK----N-----VS--RIL-----S-Q----GSAI---KSMDF--HP-VQ---QTML--L--------VGTN----LGDIAIWE
   WD 2  403-447    LAT----CTVNLQAS--LAS-----E-Y----TAAV---NRVVW--SP-DG---G-LL--G--------VAYS----KHIVHIYS
   WD 3  456-494    N------------HL--EID-----A-H----AGNV---NDLAF--SQ-PN---Q-QLCVV--------TCGE----DKTIKVWD
   WD 4  498-538    -GN----K-----LH--TFE-----G-H----EAPV---YSVCPHQKE-NI---Q-FI--F--------STAV----DGKIKAWL
   WD 5  542-584    -MG----S-----RV--DYD-----A-P----GRSC---TSMAY--CA-DG---T-RL--F--------SCGTSKEGESFIVEWN
   WD 6  588-627    -GA----V-----KR--TYL-----GLG----KRSV---GVVQF--DT-MK---N-KF--L--------VAGD----EFQVKFWD
   WD 7  628-671    MDSVDLLS-----ST--AAE-----G-G----LPSS---PCLRI--NK-EG---T-LL--A--------VSTT----DNGIKILA
   WD 8  672-710    NAE----G-----SR--ILH-----S-M----ANRG---LDSSR--AP-PG---S--V--A--------KGPI----VGTFGTPN
   WD 9  714-760    -GM----S-----LS--MGE-----R-S----GPVA---SVTGL--NG-DN---R-SL--PDVKPRIADDAEK----SKTWKLTE
   WD10  764-806    -RS----Q-----LR--TLR-----L-PDTLLPARV---VKLIY--TN-SG---G-AI--L--------ALAE----NAAHKLWK
   WD11  829-872    PSS----G-----VL--MTNDTREGN-K----EDVV---PCFAL--SK-ND---S-YV--M--------SAS-----GGKISLFN
   WD12  876-915    -FK----T-----MT--TFM-----A-P----PPAA---TSLAF--HPQDN---N-II--A--------IGMD----DSSIQIYN
   WD13  919-957    -DE----V-----KS--KLK-----G-H----QKRV---TGLAF--SN-VL---N-VL--V--------SSGA----DSQLCVWS
   WD14  966-1006   -SK----Q-----IQ--IPS-----G-H----SPNPLAHTRVQF--HQ-DQ---I-HV--L--------VVH-----ASQLAIYE
   WD15 1009-1050   KLE----N-----MKQWIPK-----E-S----SGSV---TDAVY--SC-DS---Q-SI--Y--------AAFD----DGSVSILT
   WD16 1061-1102   -GP----N-----SY--LPS-----N-P----SSRV---YPATV--AA-HPSEPN-QF--A--------VGLT----DGGVHVIE

   WD40 Template    TGE----C-----LR--TLS-----G-H----TSGV---TSVSF--SP-DG---K-RL--V--------SGSE----DGTIKVWD