Input parameters:

  Query = AT3G15880.3 (Len=1125)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G15880.3, Len=1125):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLTLTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDK 160 
WD40-rpts                                                                                      

Query      161 LQFPSLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240 
WD40-rpts                                                                                      

Query      241 PTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQTADSESVLKRPRPFGISDGVN 320 
WD40-rpts                                                                       (______________

Query      321 NLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILSQGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKV 400 
WD40-rpts      ___WD 1________________)  (_________________WD 2_________________)              

Query      401 WDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQQLC 480 
WD40-rpts        (____________________WD 3___________________)      (__________________WD 4____

Query      481 VVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSC 560 
WD40-rpts      _____________)   (_____________WD 5____________)   (___________________WD 6_____

Query      561 GTSKEGESFIVEWNESEGAVKRTYLGLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLR 640 
WD40-rpts      _____________)   (_________________WD 7_________________)(___________________WD 

Query      641 INKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGMSLSMGERSGPVASVT 720 
WD40-rpts      8___________________)(_________________WD 9________________)   (________________

Query      721 GLNGDNRSLPDVKPRIADDAEKSKTWKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKS 800 
WD40-rpts      _____WD10____________________)   (___________________WD11__________________)    

Query      801 ERNLLGKANSNVPPQLWQPSSGVLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAAT 880 
WD40-rpts                        (___________________WD12___________________)   (______________

Query      881 SLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQ 960 
WD40-rpts      ___WD13_________________)   (_________________WD14________________)        (____

Query      961 IPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILT 1040
WD40-rpts      ______________WD15_________________)(___________________WD16___________________)

Query     1041 ATTLQLKCRIGPNSYLPSNPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSAPGS 1120
WD40-rpts                   (_________________WD17________________)                            

Query     1121 DQQPR 1125
WD40-rpts           

17 WD40-repeats found in QUERY=AT3G15880.3 (Len=1125):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   306-344      4.25  290.13  0.00764       12.5%      0.49
  WD 2:  Seg  6   347-386      6.98  402.85  0.00023       22.5%     56.31
  WD 3:  Seg 11   403-447      7.75  434.72  8.6e-05       25.0%     48.92
  WD 4:  Seg 14   454-494      7.28  415.33  0.00016       35.0%     52.09
  WD 5:  Seg 18   498-528      4.87  315.99  0.00343       35.0%     42.93
  WD 6:  Seg 21   532-574      6.46  381.65  0.00045       22.5%     55.40
  WD 7:  Seg 25   578-617      7.08  407.07  0.00020       25.0%     57.97
  WD 8:  Seg 29   618-661      6.46  381.69  0.00045       15.0%     57.52
  WD 9:  Seg 33   662-700      6.98  403.08  0.00023       22.5%     40.90
  WD10:  Seg 37   704-750      5.12  326.03  0.00251       15.0%     37.48
  WD11:  Seg 41   754-796      6.51  383.51  0.00042       22.5%     56.51
  WD12:  Seg 47   819-862      3.99  279.50  0.01061       15.0%     50.72
  WD13:  Seg 51   866-905      7.27  415.12  0.00016       22.5%     58.40
  WD14:  Seg 55   909-947      8.94  484.14  1.9e-05       35.0%     58.06
  WD15:  Seg 59   956-996      3.97  278.65  0.01089       17.5%     45.51
  WD16:  Seg 63   997-1040     7.16  410.33  0.00018       15.0%     51.57
  WD17:  Seg 67  1054-1092     3.36  253.32  0.02375       15.0%     36.93

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  306-344    -VL----K-----RPRPF-----G-I----SDGV---NNLPVNV-LPV-TY--P--------GQSH----AHATYSTD
   WD 2  347-386    -PK----N-----VSRIL-----S-Q----GSAI---KSMDFHP-VQQTML--L--------VGTN----LGDIAIWE
   WD 3  403-447    LAT----CTVNLQASLAS-----E-Y----TAAV---NRVVWSP-DGG-LL--G--------VAYS----KHIVHIYS
   WD 4  454-494    -LR----N-----HLEID-----A-H----AGNV---NDLAFSQ-PNQ-QLCVV--------TCGE----DKTIKVWD
   WD 5  498-528    -GN----K-----LHTFE-----G-H----EAPV---YSFIF--------------------STAV----DGKIKAWL
   WD 6  532-574    -MG----S-----RVDYD-----A-P----GRSC---TSMAYCA-DGT-RL--F--------SCGTSKEGESFIVEWN
   WD 7  578-617    -GA----V-----KRTYL-----GLG----KRSV---GVVQFDT-MKN-KF--L--------VAGD----EFQVKFWD
   WD 8  618-661    MDSVDLLS-----STAAE-----G-G----LPSS---PCLRINK-EGT-LL--A--------VSTT----DNGIKILA
   WD 9  662-700    NAE----G-----SRILH-----S-M----ANRG---LDSSRAP-PGS--V--A--------KGPI----VGTFGTPN
   WD10  704-750    -GM----S-----LSMGE-----R-S----GPVA---SVTGLNG-DNR-SL--PDVKPRIADDAEK----SKTWKLTE
   WD11  754-796    -RS----Q-----LRTLR-----L-PDTLLPARV---VKLIYTN-SGG-AI--L--------ALAE----NAAHKLWK
   WD12  819-862    PSS----G-----VLMTNDTREGN-K----EDVV---PCFALSK-NDS-YV--M--------SAS-----GGKISLFN
   WD13  866-905    -FK----T-----MTTFM-----A-P----PPAA---TSLAFHPQDNN-II--A--------IGMD----DSSIQIYN
   WD14  909-947    -DE----V-----KSKLK-----G-H----QKRV---TGLAFSN-VLN-VL--V--------SSGA----DSQLCVWS
   WD15  956-996    -SK----Q-----IQIPS-----G-H----SPNPLAHTRVQFHQ-DQI-HV--L--------VVH-----ASQLAIYE
   WD16  997-1040   APK----L-ENMKQWIPK-----E-S----SGSV---TDAVYSC-DSQ-SI--Y--------AAFD----DGSVSILT
   WD17 1054-1092   -SY----L-----PSNPS-----S-R----VYPA---TVAAHPS-EPN-QF--A--------VGLT----DGGVHVIE

   WD40 Template    TGE----C-----LRTLS-----G-H----TSGV---TSVSFSP-DGK-RL--V--------SGSE----DGTIKVWD