Input parameters:
Query = AT3G15980.1 (Len=909)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT3G15980.1, Len=909):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPLRLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMY 80
WD40-rpts (_________________WD 1_________________) (_________________WD 2____________
Query 81 IRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFAS 160
WD40-rpts ____) (_________________WD 3________________) (_________________WD 4_______
Query 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPE 240
WD40-rpts __________)(___________________WD 5___________________) (_________________WD 6
Query 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMVKLGREIPVASMDSSGKIIWAKHN 320
WD40-rpts ________________) (_________________WD 7________________)
Query 321 EIQTANIKSIGAGYEATDGERLPLSVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSGLEFVWSSE 400
WD40-rpts (____________________WD 8___________________)
Query 401 GECAVRESSSKIKIFSKNFQERKSIRPTFSAEKIFGGTLLAMCSNDFICFYDWAECRLIQQIDVTVKNLYWAESGDLVAI 480
WD40-rpts (_________________WD 9______
Query 481 ASDTSFYILKYNRELVSSHFDSGRPTDEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNSSWKLNYCVGGEVTTMYHLDR 560
WD40-rpts __________)(_________________WD10_________________)
Query 561 PMYLLGYIANQSRVYLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDRANQILPTIPKEQHNNVAHFLESRGMIEDALEIAT 640
WD40-rpts
Query 641 DPDYKFDLAIQLGRLEIAKEIAEEVQSESKWKQLGELAMSSGKLQLAEDCMKYAMDLSGLLLLYSSLGDAEGVSKLACLA 720
WD40-rpts
Query 721 KEQGKNNVAFLCLFTLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSKVNPKAAESLADPEEYSNLFE 800
WD40-rpts
Query 801 DWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEESLENGNIDHEVAEENGHVENEGDEEEQQEEE 880
WD40-rpts
Query 881 VNEEEGVVDADSTDGAVLVNGSEVLTPHP 909
WD40-rpts
10 WD40-repeats found in QUERY=AT3G15980.1 (Len=909):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 4-43 6.22 371.74 0.00061 20.0% 53.31
WD 2: Seg 5 47-85 6.99 403.35 0.00023 22.5% 56.86
WD 3: Seg 9 89-127 8.11 449.78 5.4e-05 25.0% 56.57
WD 4: Seg 13 132-171 7.76 435.10 8.5e-05 37.5% 55.79
WD 5: Seg 17 172-215 8.11 449.71 5.4e-05 42.5% 52.93
WD 6: Seg 21 219-257 10.02 528.66 4.7e-06 42.5% 55.92
WD 7: Seg 25 261-299 5.72 351.11 0.00115 25.0% 55.75
WD 8: Seg 33 336-380 3.19 246.54 0.02924 17.5% 43.57
WD 9: Seg 44 453-491 3.48 258.58 0.02021 15.0% 42.84
WD10: Seg 47 492-531 5.50 341.83 0.00154 10.0% 26.85
Multiple sequence alignment of 10 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 4-43 RL--D------IKRKFAQRSERVKSVDLHP-TEPW--ILASLYSGTVCIWN
WD 2 47-85 -Q--T------ITKSFEVTELPVRSAKFIP-RKQW--VVAGADDMYIRVYN
WD 3 89-127 -M--D------KVKVFEAHSDYIRCVAVHP-TLPY--VLSSSDDMLIKLWD
WD 4 132-171 -W--A------CTQIFEGHSHYVMQVVFNPKDTNT--FASASLDRTIKIWN
WD 5 172-215 LGSPD------PNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWD
WD 6 219-257 -K--S------CVQTLDGHTHNVSAVCFHP-ELPI--IITGSEDGTVRIWH
WD 7 261-299 -Y--R------LENTLNYGLERVWAIGYIK-SSRR--VVIGYDEGTIMVKL
WD 8 336-380 AT--DGERLPLSVKELGTCDLYPQSLKHNP-NGRF--VVVCG-DGEYIIYT
WD 9 453-491 WA--E------C-RLIQQIDVTVKNLYWAE-SGDL--VAIASDTSFYILKY
WD10 492-531 NR--E------LVSSHFDSGRPTDEEGVED-AFEV--LHENDERVRTGIWV
WD40 Template TG--E------CLRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD