Input parameters:
Query = AT3G15980.2 (Len=918)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT3G15980.2, Len=918):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPLRLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMY 80
WD40-rpts (_________________WD 1_________________) (_________________WD 2____________
Query 81 IRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFAS 160
WD40-rpts ____) (_________________WD 3________________) (_________________WD 4_______
Query 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPE 240
WD40-rpts __________)(___________________WD 5___________________) (_________________WD 6
Query 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMVKLGREIPVASMDSSGKIIWAKHN 320
WD40-rpts ________________) (_________________WD 7________________)
Query 321 EIQTANIKSIGAGYEATDGERLPLSVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSGLEFVWSSE 400
WD40-rpts (____________________WD 8___________________)
Query 401 GECAVRESSSKIKIFSKNFQERKSIRPTFSAEKIFGGTLLAMCSNDFICFYDWAECRLIQQIDVTVKNLYWAESGDLVAI 480
WD40-rpts (_________________WD 9______
Query 481 ASDTSFYILKYNRELVSSHFDSGRPTDEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNSSWKLNYCVGGEVTTMYHLDR 560
WD40-rpts __________)(_________________WD10_________________)
Query 561 PMYLLGYIANQSRVYLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDRANQILPTIPKEQHNNVAHFLESRGMIEDALEIAT 640
WD40-rpts
Query 641 DPDYKFDLAIQLGRLEIAKEIAEEVQSESKWKQLGELAMSSGKLQLAEDCMKYAMDLSGLLLLYSSLGDAEGVSKLACLA 720
WD40-rpts
Query 721 KEQGKNNVAFLCLFTLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSKVNPKAAESLADPEEYSNLFE 800
WD40-rpts
Query 801 DWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEESLENGNIDHEVAEENGHVENEGDEEEQQEEE 880
WD40-rpts
Query 881 VNEEEGVVDADSTDGAVLVNGSEGEEEWGTNNKGNPSA 918
WD40-rpts
10 WD40-repeats found in QUERY=AT3G15980.2 (Len=918):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 4-43 6.17 369.72 0.00065 20.0% 53.15
WD 2: Seg 5 47-85 6.94 401.47 0.00024 22.5% 56.72
WD 3: Seg 9 89-127 8.06 447.65 5.8e-05 25.0% 56.39
WD 4: Seg 13 132-171 7.71 433.17 9.0e-05 37.5% 55.67
WD 5: Seg 17 172-215 8.05 447.06 5.9e-05 42.5% 52.78
WD 6: Seg 21 219-257 9.98 526.90 4.9e-06 42.5% 56.26
WD 7: Seg 25 261-299 5.67 349.02 0.00123 25.0% 55.61
WD 8: Seg 33 336-380 3.15 244.75 0.03088 17.5% 44.43
WD 9: Seg 44 453-491 3.40 255.23 0.02241 15.0% 41.41
WD10: Seg 47 492-531 5.36 335.99 0.00184 10.0% 27.80
Multiple sequence alignment of 10 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 4-43 RL--D------IKRKFAQRSERVKSVDLHP-TEPW--ILASLYSGTVCIWN
WD 2 47-85 -Q--T------ITKSFEVTELPVRSAKFIP-RKQW--VVAGADDMYIRVYN
WD 3 89-127 -M--D------KVKVFEAHSDYIRCVAVHP-TLPY--VLSSSDDMLIKLWD
WD 4 132-171 -W--A------CTQIFEGHSHYVMQVVFNPKDTNT--FASASLDRTIKIWN
WD 5 172-215 LGSPD------PNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWD
WD 6 219-257 -K--S------CVQTLDGHTHNVSAVCFHP-ELPI--IITGSEDGTVRIWH
WD 7 261-299 -Y--R------LENTLNYGLERVWAIGYIK-SSRR--VVIGYDEGTIMVKL
WD 8 336-380 AT--DGERLPLSVKELGTCDLYPQSLKHNP-NGRF--VVVCG-DGEYIIYT
WD 9 453-491 WA--E------C-RLIQQIDVTVKNLYWAE-SGDL--VAIASDTSFYILKY
WD10 492-531 NR--E------LVSSHFDSGRPTDEEGVED-AFEV--LHENDERVRTGIWV
WD40 Template TG--E------CLRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD