Input parameters:

  Query = AT3G15980.4 (Len=914)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G15980.4, Len=914):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLRLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMY 80  
WD40-rpts         (_________________WD 1_________________)   (_________________WD 2____________

Query       81 IRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFAS 160 
WD40-rpts      ____)   (_________________WD 3________________)    (_________________WD 4_______

Query      161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPE 240 
WD40-rpts      __________)(___________________WD 5___________________)   (_________________WD 6

Query      241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMVKLGREIPVASMDSSGKIIWAKHN 320 
WD40-rpts      ________________)   (_________________WD 7________________)                     

Query      321 EIQTANIKSIGAGYEATDGERLPLSVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSGLEFVWSSE 400 
WD40-rpts                     (____________________WD 8___________________)                    

Query      401 GECAVRESSSKIKIFSKNFQERKSIRPTFSAEKIFGGTLLAMCSNDFICFYDWAECRLIQQIDVTVKNLYWAESGDLVAI 480 
WD40-rpts                                                          (_________________WD 9______

Query      481 ASDTSFYILKYNRELVSSHFDSGRPTDEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNSSWKLNYCVGGEVTTMYHLDR 560 
WD40-rpts      __________)(_________________WD10_________________)                             

Query      561 PMYLLGYIANQSRVYLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDRANQILPTIPKEQHNNVAHFLESRGMIEDALEIAT 640 
WD40-rpts                                                                                      

Query      641 DPDYKFDLAIQLGRLEIAKEIAEEVQSESKWKQLGELAMSSGKLQLAEDCMKYAMDLSGLLLLYSSLGDAEGVSKLACLA 720 
WD40-rpts                                                                                      

Query      721 KEQGKNNVAFLCLFTLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSKVNPKAAESLADPEEYSNLFE 800 
WD40-rpts                                                                                      

Query      801 DWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEESLENGNIDHEVAEENGHVENEGDEEEQQEEE 880 
WD40-rpts                                                                                      

Query      881 VNEEEGVVDADSTDGAVLVNGSEGEEEWVLTPHP 914 
WD40-rpts                                        

10 WD40-repeats found in QUERY=AT3G15980.4 (Len=914):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       6.14  368.47  0.00067       20.0%     53.18
  WD 2:  Seg  5    47-85       6.92  400.55  0.00025       22.5%     56.81
  WD 3:  Seg  9    89-127      8.04  446.70  5.9e-05       25.0%     56.37
  WD 4:  Seg 13   132-171      7.69  432.46  9.2e-05       37.5%     55.98
  WD 5:  Seg 17   172-215      8.03  446.26  6.0e-05       42.5%     52.78
  WD 6:  Seg 21   219-257      9.96  525.99  5.1e-06       42.5%     56.04
  WD 7:  Seg 25   261-299      5.63  347.15  0.00130       25.0%     54.82
  WD 8:  Seg 33   336-380      3.17  245.53  0.03016       17.5%     44.02
  WD 9:  Seg 44   453-491      3.39  254.66  0.02280       15.0%     41.98
  WD10:  Seg 47   492-531      5.30  333.55  0.00199       10.0%     27.54

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     RL--D------IKRKFAQRSERVKSVDLHP-TEPW--ILASLYSGTVCIWN
   WD 2   47-85     -Q--T------ITKSFEVTELPVRSAKFIP-RKQW--VVAGADDMYIRVYN
   WD 3   89-127    -M--D------KVKVFEAHSDYIRCVAVHP-TLPY--VLSSSDDMLIKLWD
   WD 4  132-171    -W--A------CTQIFEGHSHYVMQVVFNPKDTNT--FASASLDRTIKIWN
   WD 5  172-215    LGSPD------PNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWD
   WD 6  219-257    -K--S------CVQTLDGHTHNVSAVCFHP-ELPI--IITGSEDGTVRIWH
   WD 7  261-299    -Y--R------LENTLNYGLERVWAIGYIK-SSRR--VVIGYDEGTIMVKL
   WD 8  336-380    AT--DGERLPLSVKELGTCDLYPQSLKHNP-NGRF--VVVCG-DGEYIIYT
   WD 9  453-491    WA--E------C-RLIQQIDVTVKNLYWAE-SGDL--VAIASDTSFYILKY
   WD10  492-531    NR--E------LVSSHFDSGRPTDEEGVED-AFEV--LHENDERVRTGIWV

   WD40 Template    TG--E------CLRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD