Input parameters:

  Query = AT3G15980.5 (Len=930)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G15980.5, Len=930):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLRLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMY 80  
WD40-rpts              (_______________WD 1______________)   (_________________WD 2____________

Query       81 IRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFAS 160 
WD40-rpts      ____)   (_________________WD 3________________)    (_________________WD 4_______

Query      161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPE 240 
WD40-rpts      __________)(___________________WD 5___________________)   (_________________WD 6

Query      241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMVKLGREIPVASMDSSGKIIWAKHN 320 
WD40-rpts      ________________)   (_________________WD 7________________)                     

Query      321 EIQTANIKSIGAGYELSSLYLRLLMEKDFPCLLKSWGPVIFIHNYSNSQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRS 400 
WD40-rpts                              (_____________________WD 8_____________________)        

Query      401 FGSGLEFVWSSEGECAVRESSSKIKIFSKNFQERKSIRPTFSAEKIFGGTLLAMCSNDFICFYDWAECRLIQQIDVTVKN 480 
WD40-rpts                                                                      (_______________

Query      481 LYWAESGDLVAIASDTSFYILKYNRELVSSHFDSGRPTDEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNSSWKLNYCV 560 
WD40-rpts      __WD 9________________)(_________________WD10_________________)                 

Query      561 GGEVTTMYHLDRPMYLLGYIANQSRVYLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDRANQILPTIPKEQHNNVAHFLES 640 
WD40-rpts                                                                                      

Query      641 RGMIEDALEIATDPDYKFDLAIQLGRLEIAKEIAEEVQSESKWKQLGELAMSSGKLQLAEDCMKYAMDLSGLLLLYSSLG 720 
WD40-rpts                                                                                      

Query      721 DAEGVSKLACLAKEQGKNNVAFLCLFTLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSKVNPKAAES 800 
WD40-rpts                                                                                      

Query      801 LADPEEYSNLFEDWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEESLENGNIDHEVAEENGHVE 880 
WD40-rpts                                                                                      

Query      881 NEGDEEEQQEEEVNEEEGVVDADSTDGAVLVNGSEGEEEWGTNNKGNPSA 930 
WD40-rpts                                                        

10 WD40-repeats found in QUERY=AT3G15980.5 (Len=930):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-43       5.17  328.03  0.00236       20.0%     49.71
  WD 2:  Seg  4    47-85       6.84  397.41  0.00027       22.5%     56.15
  WD 3:  Seg  8    89-127      8.00  445.31  6.2e-05       25.0%     56.67
  WD 4:  Seg 12   132-171      7.62  429.51  0.00010       37.5%     51.65
  WD 5:  Seg 16   172-215      7.75  434.65  8.6e-05       42.5%     50.01
  WD 6:  Seg 20   219-257      9.90  523.60  5.5e-06       42.5%     54.57
  WD 7:  Seg 24   261-299      5.43  338.78  0.00169       25.0%     53.05
  WD 8:  Seg 32   345-392      2.88  233.78  0.04314       17.5%     43.04
  WD 9:  Seg 43   465-503      3.31  251.19  0.02535       15.0%     38.42
  WD10:  Seg 46   504-543      4.86  315.46  0.00349       10.0%     16.59

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-43     -------R---------KFAQRSERVKSVDLHP-TEPW--ILASLYSGTVCIWN
   WD 2   47-85     -Q--TITK---------SFEVTELPVRSAKFIP-RKQW--VVAGADDMYIRVYN
   WD 3   89-127    -M--DKVK---------VFEAHSDYIRCVAVHP-TLPY--VLSSSDDMLIKLWD
   WD 4  132-171    -W--ACTQ---------IFEGHSHYVMQVVFNPKDTNT--FASASLDRTIKIWN
   WD 5  172-215    LGSPDPNF---------TLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWD
   WD 6  219-257    -K--SCVQ---------TLDGHTHNVSAVCFHP-ELPI--IITGSEDGTVRIWH
   WD 7  261-299    -Y--RLEN---------TLNYGLERVWAIGYIK-SSRR--VVIGYDEGTIMVKL
   WD 8  345-392    ME--KDFPCLLKSWGPVIFIHNYSNSQSLKHNP-NGRF--VVVCG-DGEYIIYT
   WD 9  465-503    WA--EC-R---------LIQQIDVTVKNLYWAE-SGDL--VAIASDTSFYILKY
   WD10  504-543    NR--ELVS---------SHFDSGRPTDEEGVED-AFEV--LHENDERVRTGIWV

   WD40 Template    TG--ECLR---------TLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD