Input parameters:

  Query = AT3G16830.1 (Len=1131)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G16830.1, Len=1131):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLTLENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREK 160 
WD40-rpts                                                                                      

Query      161 LAFPSFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240 
WD40-rpts                                                                                      

Query      241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDYQSADHEQLMKRLRSAQTSNE 320 
WD40-rpts                                                                                      

Query      321 VTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIF 400 
WD40-rpts                      (_________________WD 1_________________)         (______________

Query      401 QGSIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSDLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLIK 480 
WD40-rpts      _________WD 2_______________________)(____________________WD 3__________________

Query      481 VWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGT 560 
WD40-rpts      __)  (__________________WD 4_________________)   (___________________WD 5_______

Query      561 SKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFN 640 
WD40-rpts      ___________)   (_________________WD 6_________________)(___________________WD 7_

Query      641 KDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPNGI 720 
WD40-rpts      __________________)(____________________WD 8___________________)   (____________

Query      721 EAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQN 800 
WD40-rpts      _____WD 9________________)(_____________________WD10____________________)(______

Query      801 PTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAF 880 
WD40-rpts      ________________________WD11_____________________________)   (_________________W

Query      881 HPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQLPPG 960 
WD40-rpts      D12_________________)   (_________________WD13________________)          (______

Query      961 KAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLR 1040
WD40-rpts      __________WD14_______________)(____________________WD15___________________)     

Query     1041 LRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSA 1120
WD40-rpts             (__________________WD16__________________)                               

Query     1121 ANNSSSDQIQR 1131
WD40-rpts                 

16 WD40-repeats found in QUERY=AT3G16830.1 (Len=1131):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   337-376      6.43  380.38  0.00047       22.5%     55.47
  WD 2:  Seg 11   386-437      6.59  386.79  0.00038       25.0%     48.14
  WD 3:  Seg 14   438-483      6.81  395.83  0.00029       27.5%     56.59
  WD 4:  Seg 18   486-526      7.31  416.68  0.00015       32.5%     55.05
  WD 5:  Seg 22   530-572      6.49  382.55  0.00043       22.5%     45.48
  WD 6:  Seg 26   576-615      6.98  403.07  0.00023       30.0%     56.80
  WD 7:  Seg 30   616-659      6.92  400.64  0.00025       17.5%     53.31
  WD 8:  Seg 34   660-704      5.57  344.88  0.00140       12.5%     51.18
  WD 9:  Seg 38   708-746      6.64  388.87  0.00036       10.0%     46.40
  WD10:  Seg 41   747-793      6.64  388.85  0.00036       12.5%     46.41
  WD11:  Seg 45   794-858      3.39  254.62  0.02282       10.0%     39.85
  WD12:  Seg 48   862-901      7.06  406.30  0.00021       22.5%     59.39
  WD13:  Seg 52   905-943      8.79  477.86  2.3e-05       30.0%     57.93
  WD14:  Seg 57   954-990      4.47  299.32  0.00575       17.5%     37.96
  WD15:  Seg 60   991-1035     7.20  412.00  0.00017       25.0%     50.84
  WD16:  Seg 65  1048-1089     5.83  355.66  0.00100       15.0%     38.93

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  337-376    -P----R--------------------------N-----V------------VSTIR-QGSVVI--SMDF--HP---SHHTL--LA----VGCSSGEVTLWE
   WD 2  386-437    EP----F--------------------------K-----IWNMAACSVIFQGSIVKE-PSISVT--RVAW--SP---DGN-L--LG----VSFTKHLIHVYA
   WD 3  438-483    YQGSDLR--------------------------Q-----H------------LEIDA-HVGCVN--DLAF--AH---PNK-QMCVV----TCGDDKLIKVWD
   WD 4  486-526    -G----K--------------------------K-----L------------FTFEG-HEAPVY--SICPHQKE---NIQ-F--IF----STALDGKIKAWL
   WD 5  530-572    -V----G--------------------------S-----R------------VDYDA-PGQWCT--TMLY--SA---DGS-R--LFSCGTSKEGDSFLVEWN
   WD 6  576-615    -G----A--------------------------L-----K------------RTYLGFRKKSAG--VVQF--DT---TRN-R--FL----AVGEDNQIKFWN
   WD 7  616-659    MD----N----------------------TNLLT-----V------------VEAEG-GLPNLP--RLRF--NK---DGN-L--LA----VTTADNGFKILA
   WD 8  660-704    NT-DGLR--------------------------T-----L------------RAFEA-RSFEASKASIDM--KV---STS-A--MA----SSISPAIGKIEH
   WD 9  708-746    -G----S--------------------------P-----A------------RPTPI-PNGIEA--MSRT--ME---KPR-N--LD----SVDKSKPLELTE
   WD10  747-793    IV----D-------------------PTQCRQVT-----M------------PDSKD-SVSKVA--RLLY--TN---SGV-G--VL----ALGSNGVQRLWK
   WD11  794-858    WI----RNEQNPTGKATASVTPQHWQPNSGLLMA-----N------------DVPEN-PEGSVP--CIAL--SK---NDS-Y--VM----SAC-GGKVSLFN
   WD12  862-901    -F----K--------------------------V-----M------------TTFMP-PPPAST--FLAF--HP--QDNN-I--IA----IGMEDSSIHIYN
   WD13  905-943    -D----E--------------------------V-----K------------TKLKG-HQKHIT--GLAF--ST---ALN-I--LV----SSGADAQLFFWT
   WD14  954-990    ------A--------------------------I-----Q------------LPPGK-APVGDT--RVQF--HN---DQI----QL----LVSHETQLAIYD
   WD15  991-1035   AS----K--------------------------MECIHKW------------VPQEA-LSSPIT--SASY--SC---NSQ-L--VY----ASFADGNIAVFD
   WD16 1048-1089   -S----A--------------------------Y-----M------------PQPTP-NSAPIF--PQVI--TAHPQEPN-Q--LA----VGLSDGSVKVIE

   WD40 Template    TG----E--------------------------C-----L------------RTLSG-HTSGVT--SVSF--SP---DGK-R--LV----SGSEDGTIKVWD