Input parameters:

  Query = AT3G18060.1 (Len=609)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G18060.1, Len=609):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MELSETYACVPSTERGRGILISGNSKSDTILYTNGRSVVTLDLNNPLKVSIYGEHAYPATVARYSPNGEWIASGDVSGTV 80  
WD40-rpts         (_________________WD 1________________)   (_________________WD 2_____________

Query       81 RIWGAYNDHVLKNEFKVLAGRIDDLQWSADGMRIVASGDGKGKSLVRAFMWDSGSNVGEFDGHSRRVLSCAIKPTRPFRI 160 
WD40-rpts      ___)(____________________WD 3____________________)   (_________________WD 4_____

Query      161 VTCGEDFLVNFYEGPPFKFKLSSREHSNFVNCVRFAPDGSKFITVSSDKKGIIYDGKTCEILGELSSDDGHKGSIYAVSW 240 
WD40-rpts      ____________)   (_________________WD 5________________)(____________________WD 6

Query      241 SPDGKQVLTVSADKSAKIWDISDNGSGSLNTTLNCPGSSGGVDDMLVGCLWQNDHIVTVSLGGTISIFSASDLDKSPFQF 320 
WD40-rpts      ___________________)(______________________WD 7_____________________)    (______

Query      321 SGHMKNVSSLAVLKGNADYILSGSYDGLICKWMLGRGFCGKLQRTQNSQIKCFAAHEEEIVTSGYDNKISRISYKDDQCT 400 
WD40-rpts      ___________WD 8_________________)(_________________WD 9_________________)       

Query      401 NEESIDIGNQPKDLSLAPLSPDLLLVTFESGVVFLRDGKVVSTINLGFIVTALAVTPDGTEAVIGGQDGKLHLYSINGDS 480 
WD40-rpts      (_________________WD10________________)(_______________WD11_______________)(____

Query      481 LTEEAVLERHRGAISVIRYSPDLSMFASADLNREAVVWDRVSREMKLKNMLYHSARINCLAWSPNSTMVATGSLDTCVIV 560 
WD40-rpts      _______________WD12___________________)    (_________________WD13_______________

Query      561 YEVDKPASSRMTIKGAHLGGVYGLGFADDSHVVSSGEDACIRVWSFTPQ 609 
WD40-rpts      _)     (________________WD14________________)    

14 WD40-repeats found in QUERY=AT3G18060.1 (Len=609):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-42       3.82  272.65  0.01310        7.5%     43.73
  WD 2:  Seg  5    46-84       8.80  478.20  2.2e-05       25.0%     53.33
  WD 3:  Seg  9    85-130      5.97  361.41  0.00084       12.5%     55.02
  WD 4:  Seg 13   134-173      7.49  423.86  0.00012       25.0%     55.71
  WD 5:  Seg 17   177-215      8.71  474.29  2.5e-05       25.0%     58.28
  WD 6:  Seg 21   216-260      9.13  491.95  1.5e-05       40.0%     48.99
  WD 7:  Seg 25   261-309      5.46  340.13  0.00162       20.0%     47.30
  WD 8:  Seg 29   314-353      7.44  421.81  0.00013       30.0%     53.91
  WD 9:  Seg 33   354-393      5.86  356.84  0.00097       15.0%     49.96
  WD10:  Seg 37   401-439      4.58  303.68  0.00502       12.5%     24.46
  WD11:  Seg 41   440-475      7.09  407.73  0.00020       22.5%     55.70
  WD12:  Seg 45   476-519      7.93  442.29  6.8e-05       22.5%     57.68
  WD13:  Seg 49   524-562      8.16  451.79  5.1e-05       20.0%     57.83
  WD14:  Seg 53   568-605      6.25  372.75  0.00059       30.0%     49.86

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-42     SE----T-------Y-----ACVPSTERGRGILIS-GNS--KSD-TILYTN-G---RSVVTLD
   WD 2   46-84     -P----L-------K-----VSIYGEHAYPATVAR-YSP--NGE-WIASGDVS---GTVRIWG
   WD 3   85-130    AY----N----DHVL-----KNEFKVLAGRIDDLQ-WSA--DGM-RIVASGDGKGKSLVRAFM
   WD 4  134-173    -G----S-------N-----VGEFDGHSRRVLSCA-IKP--TRPFRIVTCGED---FLVNFYE
   WD 5  177-215    -F----K-------F-----KLSSREHSNFVNCVR-FAP--DGS-KFITVSSD---KKGIIYD
   WD 6  216-260    GK----T-------CEILGELSSDDGHKGSIYAVS-WSP--DGK-QVLTVSAD---KSAKIWD
   WD 7  261-309    IS----DNGSGSLNT-----TLNCPGSSGGVDDML-VGCLWQND-HIVTVSLG---GTISIFS
   WD 8  314-353    -D----K-------S-----PFQFSGHMKNVSSLAVLKG--NAD-YILSGSYD---GLICKWM
   WD 9  354-393    LG----R-------G-----FCGKLQRTQNSQIKC-FAA--HEE-EIVTSGYD---NKISRIS
   WD10  401-439    -N----E-------E-----SIDIGNQPKDLSLAP-LSP--DLL-LVTFESGV---VFLRDGK
   WD11  440-475    --------------------VVSTINLGFIVTALA-VTP--DGT-EAVIGGQD---GKLHLYS
   WD12  476-519    INGDSLT-------E-----EAVLERHRGAISVIR-YSP--DLS-MFASADLN---REAVVWD
   WD13  524-562    -E----M-------K-----LKNMLYHSARINCLA-WSP--NST-MVATGSLD---TCVIVYE
   WD14  568-605    -S----S-------R-----MTIKGAHLGGVYGLG-FAD--DSH--VVSSGED---ACIRVWS

   WD40 Template    TG----E-------C-----LRTLSGHTSGVTSVS-FSP--DGK-RLVSGSED---GTIKVWD