Accession: AT3G18140.2 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT3G18140.2 (Len=224)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G18140.2, Len=224):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQPSVILATASYDHTIRFWEAETGRCYRTIQYPDSHVNRLEITPDKHYLAAACNPHIRLFDVNSNSPQPVMTYDSHTNN 80  
WD40-rpts      (________WD 1_______)   (________________WD 2________________)     (____________

Query       81 VMAVGFQCDAKWMYSGSEDGTVKIWDLRAPGCQKEYESVAAVNTVVLHPNQTELISGDQNGNIRVWDLRANSCSCELVPE 160 
WD40-rpts      _____WD 3________________)   (________________WD 4________________)   (_________

Query      161 VDTAVRSLTVMWDGTMVVAANNRGTCYVWRLLRGKQTMTEFEPLHKLQAHNGHILKCLLSPANK 224 
WD40-rpts      ________WD 5_________________)

5 WD40-repeats found in QUERY=AT3G18140.2 (Len=224):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-21       3.16  245.16  0.03049       17.5%     27.44
  WD 2:  Seg  3    25-62       8.18  452.54  5.0e-05       27.5%     55.83
  WD 3:  Seg  7    68-106     10.41  544.49  2.8e-06       45.0%     56.62
  WD 4:  Seg 11   110-147      8.04  446.81  5.9e-05       30.0%     58.55
  WD 5:  Seg 15   151-190      8.00  445.28  6.2e-05       27.5%     56.78

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-21     -------------------MSQPSVILATASYDHTIRFWE
   WD 2   25-62     GRCYRTIQYPD-SHVNRLEITPDKHYLAAAC-NPHIRLFD
   WD 3   68-106    PQPVMTYDSHT-NNVMAVGFQCDAKWMYSGSEDGTVKIWD
   WD 4  110-147    PGCQKEYESV--AAVNTVVLHPNQTELISGDQNGNIRVWD
   WD 5  151-190    NSCSCELVPEVDTAVRSLTVMWDGTMVVAANNRGTCYVWR

   WD40 Template    GECLRTLSGHT-SGVTSVSFSPDGKRLVSGSEDGTIKVWD