Input parameters:

  Query = AT3G18860.1 (Len=760)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G18860.1, Len=760):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVMDIDFNEYKLRCELHGHDDDVRGICVCNDENIATSSRDRTIRVWSLDPSDKRKYTSEKILLGHTSFVGPLAWIPPTDE 80  
WD40-rpts               (________________WD 1________________)        (___________________WD 2_

Query       81 YPEGRLVSGSMDTFVFVWNLMNGENIQTLKGHQMQVTGVAIDNEDIVSSSVDQTLKRWRNGQLVESWDAHQSPIQAVIRL 160 
WD40-rpts      __________________)   (________________WD 3_______________)(_________________WD 

Query      161 PSGELVSGSSDASLKLWKGKTSLQTLSGHTDTVRGLAVMPDLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVYSVDAHS 240 
WD40-rpts      4________________) (________________WD 5________________)  (________________WD 6

Query      241 SGLIVSASEDRHAKIWKDGVCVQSLEHPGCIWDAKFLETGDIVTACSDGVVRVWTVRHDAIADQMEIDAYDSQISQYKLS 320 
WD40-rpts      ________________)(________________WD 7________________)                        (

Query      321 RKKVGGLKLDELPGLDSLTSPGTSDGQTKVVREGDNGVAYAWNMKEQRWDKIGEVVDGPDGVADRPIHEGVQYDFVFDVD 400 
WD40-rpts      ___________________WD 8___________________)                                     

Query      401 IGDGEPIRKLPYNRSDNPYDAADKWLLKENLPFAYRQQIVEFILQNSGQKDFNFNPSFRDPFTGANAYVPGQASRTAATP 480 
WD40-rpts                                                                                      

Query      481 AKPLYKHIPKRGVLVFDAAQYDGILKKMTEFNTTLRSDAVNNDKSLTELEVSRVGAIVNILKDTSHYHSTNFADMDIALL 560 
WD40-rpts                                                                                      

Query      561 LKVLQAWPPAMMFPATDIVRMLVLHHHGASLLIKHVENNNDLLLDLIKKVTEDSALPANLLTTVRVLVNLFKNSSFHYWL 640 
WD40-rpts                                                                                      

Query      641 QTHHSQILDAFSNCYSSPNKNLQLAYSTLLLNYAVLLIEKKDQEGQAQVLSAALQVAEEEAADVDSKFRSLVAIGSLMLE 720 
WD40-rpts                                                                                      

Query      721 GLVKKIAIDFDVESIAKSAKASKEAKIAEVGADIDLVIRQ 760 
WD40-rpts                                              

8 WD40-repeats found in QUERY=AT3G18860.1 (Len=760):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-47       6.77  394.29  0.00030       27.5%     51.98
  WD 2:  Seg  6    56-99       5.92  359.28  0.00090       40.0%     48.02
  WD 3:  Seg 10   103-139      7.49  423.90  0.00012       42.5%     47.68
  WD 4:  Seg 14   140-178      9.07  489.47  1.6e-05       35.0%     51.29
  WD 5:  Seg 17   180-217      6.91  399.91  0.00025       40.0%     46.18
  WD 6:  Seg 21   220-257      8.15  451.25  5.2e-05       45.0%     53.83
  WD 7:  Seg 25   258-295      6.77  394.12  0.00030       27.5%     54.04
  WD 8:  Seg 30   320-363      3.60  263.41  0.01742       17.5%     22.78

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-47     -YKLRCELH----GHDDDVRGICVCNDE------NIATSSRDRTIRVWS
   WD 2   56-99     -YTSEKILL----GHTSFVGPLAWIPPTDEYPEGRLVSGSMDTFVFVWN
   WD 3  103-139    -GENIQTLK----GHQMQVTGVAI--DNE-----DIVSSSVDQTLKRWR
   WD 4  140-178    NGQLVESWD----AHQSPIQAVIRLPSGE------LVSGSSDASLKLWK
   WD 5  180-217    -KTSLQTLS----GHTDTVRGLAVMPDLG------FLSASHDGSIRLWA
   WD 6  220-257    -GEVLLEMV----GHTSLVYSVDAHSSG------LIVSASEDRHAKIWK
   WD 7  258-295    DGVCVQSL-----EHPGCIWDAKFLETGD------IVTACSDGVVRVWT
   WD 8  320-363    SRKKVGGLKLDELPGLDSLTSPGTSDGQT-----KVVREGDNGVAYAWN

   WD40 Template    TGECLRTLS----GHTSGVTSVSFSPDGK-----RLVSGSEDGTIKVWD