Input parameters:
Query = AT3G18860.2 (Len=760)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT3G18860.2, Len=760):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVMDIDFNEYKLRCELHGHDDDVRGICVCNDENIATSSRDRTIRVWSLDPSDKRKYTSEKILLGHTSFVGPLAWIPPTDE 80
WD40-rpts (________________WD 1________________) (___________________WD 2_
Query 81 YPEGRLVSGSMDTFVFVWNLMNGENIQTLKGHQMQVTGVAIDNEDIVSSSVDQTLKRWRNGQLVESWDAHQSPIQAVIRL 160
WD40-rpts __________________) (________________WD 3_______________)(_________________WD
Query 161 PSGELVSGSSDASLKLWKGKTSLQTLSGHTDTVRGLAVMPDLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVYSVDAHS 240
WD40-rpts 4________________)(_________________WD 5________________) (________________WD 6
Query 241 SGLIVSASEDRHAKIWKDGVCVQSLEHPGCIWDAKFLETGDIVTACSDGVVRVWTVRHDAIADQMEIDAYDSQISQYKLS 320
WD40-rpts ________________)(________________WD 7________________) (
Query 321 RKKVGGLKLDELPGLDSLTSPGTSDGQTKVVREGDNGVAYAWNMKEQRWDKIGEVVDGPDGVADRPIHEGVQYDFVFDVD 400
WD40-rpts ___________________WD 8___________________)
Query 401 IGDGEPIRKLPYNRSDNPYDAADKWLLKENLPFAYRQQIVEFILQNSGQKDFNFNPSFRDPFTGANAYVPGQASRTAATP 480
WD40-rpts
Query 481 AKPLYKHIPKRGVLVFDAAQYDGILKKMTEFNTTLRSDAVNNDKSLTELEVSRVGAIVNILKDTSHYHSTNFADMDIALL 560
WD40-rpts
Query 561 LKVLQAWPPAMMFPATDIVRMLVLHHHGASLLIKHVENNNDLLLDLIKKVTEDSALPANLLTTVRVLVNLFKNSSFHYWL 640
WD40-rpts
Query 641 QTHHSQILDAFSNCYSSPNKNLQLAYSTLLLNYAVLLIEKKDQEGQAQVLSAALQVPEEEAADVDSKFRSLVAIGSLMLE 720
WD40-rpts
Query 721 GLVKKIAIDFDVESIAKSAKASKEAKIAEVGADIDLVIRQ 760
WD40-rpts
8 WD40-repeats found in QUERY=AT3G18860.2 (Len=760):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 10-47 6.80 395.70 0.00029 27.5% 54.41
WD 2: Seg 6 56-99 5.92 359.36 0.00089 40.0% 50.73
WD 3: Seg 10 103-139 7.51 425.05 0.00012 42.5% 52.51
WD 4: Seg 14 140-178 9.11 490.97 1.5e-05 35.0% 54.77
WD 5: Seg 18 179-217 8.56 468.12 3.1e-05 40.0% 44.50
WD 6: Seg 21 220-257 8.09 448.68 5.6e-05 45.0% 55.42
WD 7: Seg 25 258-295 6.79 394.99 0.00030 27.5% 55.00
WD 8: Seg 31 320-363 3.39 254.65 0.02280 17.5% 27.47
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 10-47 -YKLRCELH----GHDDDVRGICVCNDE------NIATSSRDRTIRVWS
WD 2 56-99 -YTSEKILL----GHTSFVGPLAWIPPTDEYPEGRLVSGSMDTFVFVWN
WD 3 103-139 -GENIQTLK----GHQMQVTGVAI--DNE-----DIVSSSVDQTLKRWR
WD 4 140-178 NGQLVESWD----AHQSPIQAVIRLPSGE------LVSGSSDASLKLWK
WD 5 179-217 GKTSLQTLS----GHTDTVRGLAVMPDLG------FLSASHDGSIRLWA
WD 6 220-257 -GEVLLEMV----GHTSLVYSVDAHSSG------LIVSASEDRHAKIWK
WD 7 258-295 DGVCVQSL-----EHPGCIWDAKFLETGD------IVTACSDGVVRVWT
WD 8 320-363 SRKKVGGLKLDELPGLDSLTSPGTSDGQT-----KVVREGDNGVAYAWN
WD40 Template TGECLRTLS----GHTSGVTSVSFSPDGK-----RLVSGSEDGTIKVWD