Input parameters:

  Query = AT3G18950.1 (Len=473)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G18950.1, Len=473):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVIATETTSSSHHRRLTFASFLNSDPAADEEEQSHGVDDIINPSSSNKNINKDVHHNYRQSQSNASTTSGESSPNQVLSP 80  
WD40-rpts                                                 (_________________WD 1_______________

Query       81 WNQTYSPYYTDTTNTPSMSPSPWNQTYSPYYKSPWIYQTRNIDDDTDNGLIGTIVRQDGHVYSLAASGDLLFTGSDSKNI 160 
WD40-rpts      _)  (_________________WD 2_________________)   (________________WD 3____________

Query      161 RVWKDLKDHTGFKSTSGLVKAIVITGDNRIFTGHQDGKIRVWRGSKRRTGGYSRIGSLPTLKEFLTKSVNPKNYVEVRRR 240 
WD40-rpts      ___)(_________________WD 4________________)(______________WD 5______________)(__

Query      241 KNVLKIRHYDAVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKCLESIQAHDDAINTVAAGFDDLLFTGSADGTLKVWKRE 320 
WD40-rpts      _______________WD 6_________________)   (________________WD 7________________)  

Query      321 LQGKGTKHFLVNVLMKQENAVTALAVNITAAVVYCGSSDGTVNFWEGQKYLSHGGTLRGHRLAVLCLAAAGSLVLSGGAD 400 
WD40-rpts                 (_______________WD 8______________)(__________________WD 9___________

Query      401 KNICVWRRNGDGSHSCLSVLMDHVGPVKCLTAVEDDGEGHREKGDQKWIVYSGSLDKSVKVWRVTESASTVIG 473 
WD40-rpts      ______)      (______________________WD10______________________)          

10 WD40-repeats found in QUERY=AT3G18950.1 (Len=473):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    44-82       6.80  395.47  0.00029       10.0%     16.23
  WD 2:  Seg  3    85-124      3.67  266.11  0.01603       12.5%     -0.04
  WD 3:  Seg  4   128-164      6.63  388.47  0.00036       25.0%     47.42
  WD 4:  Seg  8   165-203      8.44  463.36  3.5e-05       22.5%     49.46
  WD 5:  Seg 12   204-237      6.20  370.92  0.00062       15.0%     41.46
  WD 6:  Seg 15   238-277      9.48  506.24  9.3e-06       30.0%     55.15
  WD 7:  Seg 19   281-318      8.64  471.58  2.7e-05       35.0%     49.85
  WD 8:  Seg 23   332-366      8.25  455.64  4.5e-05       22.5%     47.16
  WD 9:  Seg 26   367-407      6.86  397.91  0.00027       32.5%     45.03
  WD10:  Seg 30   414-463      6.73  392.83  0.00032       32.5%     51.19

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   44-82     -SSSN---KNINKDVHHNYRQSQSNA-----------STTSGESSPNQVLSPWN
   WD 2   85-124    -YSPY---YTDTTNTPSMSPSPWNQT----------YSPYYKSPWIYQTRNIDD
   WD 3  128-164    -NGLI---GTIVRQDGHVYSL--AAS-----------GDLLFTGSDSKNIRVWK
   WD 4  165-203    DLKDH---TGFKSTSGLVKAIVITGD-----------N-RIFTGHQDGKIRVWR
   WD 5  204-237    ---------GSKRRTGGYSRIGSLPT-----------LKEFLTKSVNPKNYVEV
   WD 6  238-277    RRRKN---VLKIRHYDAVSCLSLNEE-----------LGLLYSGSWDKTLKVWR
   WD 7  281-318    -SKCL---ESIQAHDDAINTVAAGFD-----------D-LLFTGSADGTLKVWK
   WD 8  332-366    --------NVLMKQENAVTALAVNIT-----------AAVVYCGSSDGTVNFWE
   WD 9  367-407    GQKYLSHGGTLRGHRLAV--LCLAAA-----------GSLVLSGGADKNICVWR
   WD10  414-463    -HSCL---SVLMDHVGPVKCLTAVEDDGEGHREKGDQKWIVYSGSLDKSVKVWR

   WD40 Template    TGECL---RTLSGHTSGVTSVSFSPD-----------GKRLVSGSEDGTIKVWD