Input parameters:

  Query = AT3G21060.1 (Len=547)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G21060.1, Len=547):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNAPIIDPLQGDFPEVIEEYLEHGVIKCVAFNHRGSLLAAGCADGGCVIWDFETRGIAKEIRDNDCSAAITSVSWSKYGH 80  
WD40-rpts                (__________________WD 1_________________)   (__________________WD 2___

Query       81 RLLVSAADKSLTLWDVSTGEKIARTILQQTPLQARLNPGLSSPSLCLACPLSSAPMIVDFDIDCTTLLPVSVPEMPDVLA 160 
WD40-rpts      ______________)                          (_________________WD 3________________)

Query      161 PPQRSKCPESNPPFSPAAACFNKCGDLVYIGNSKGEILIVDYKSVRVLALVSASGAAPVKNIVFSRNGQYLLTNSHDRTI 240 
WD40-rpts      (__________________WD 4_________________)   (_________________WD 5______________

Query      241 RIYENLLPAKNVLKSLEDLGKNIDGLDGIEKMKTVGSKCLTLFREFQDSVTKMHWKAPCFSGDGEWVVGGSACKGEHKIY 320 
WD40-rpts      ___)                               (_____________________WD 6___________________

Query      321 IWDRAGHLVKILEGPKEALIDLAWHPVHPIIVSVSLAGLVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPET 400 
WD40-rpts      __)  (_________________WD 7________________)                         (__________

Query      401 EKVKVLDVNEDEEVDIDTVEKDAFSDSDMSVEELRYLPAEPIPDTNDQQDNLVESIKLIEGQISASPASEEAGQNGHHAS 480 
WD40-rpts      _______WD 8________________)                                                    

Query      481 SPQAEEMGETRGKRKRKPSEKAMELQAEKAKPLKGSGKTVRAKNRAAFDQETDDSINGGDDDDDAYY 547 
WD40-rpts                                                                         

8 WD40-repeats found in QUERY=AT3G21060.1 (Len=547):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-51       7.25  414.07  0.00016       25.0%     48.06
  WD 2:  Seg  6    55-95       8.05  447.08  5.9e-05       27.5%     57.32
  WD 3:  Seg 12   122-160      6.49  382.83  0.00043       20.0%     37.62
  WD 4:  Seg 16   161-201      7.05  405.82  0.00021       17.5%     43.00
  WD 5:  Seg 19   205-244      7.83  437.94  7.8e-05       27.5%     55.38
  WD 6:  Seg 24   276-323      6.54  384.77  0.00041       35.0%     48.66
  WD 7:  Seg 28   326-364      9.06  489.06  1.6e-05       22.5%     56.98
  WD 8:  Seg 32   390-428      4.83  314.28  0.00362       17.5%     23.11

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-51     -GDFPE-VIEEY--LEHGVIK-----CVAFNHRGSLLAAGCA---DGGCVIWD
   WD 2   55-95     -RGIAK-EIRDNDCS--AAIT-----SVSWSKYGHRLLVSAA---DKSLTLWD
   WD 3  122-160    -SPSLC-LACPL--S--SAPM-----IVDFDIDCTTLLPVSV---PEMPDVLA
   WD 4  161-201    PPQRSKCPESNP--P--FSPA-----AACFNKCGDLVYIGNS---KGEILIVD
   WD 5  205-244    -VRVLA-LVSAS-GA--APVK-----NIVFSRNGQYLLTNSH---DRTIRIYE
   WD 6  276-323    GSKCLT-LFREF--Q--DSVTKMHWKAPCFSGDGEWVVGGSACKGEHKIYIWD
   WD 7  326-364    -GHLVK-ILEGP--K--EALI-----DLAWHPVHPIIVSVSL---AGLVYIWA
   WD 8  390-428    -REDEF-DLIPE--T--EKVK-----VLDVNEDEEVDIDTVE---KDAFSDSD

   WD40 Template    TGECLR-TLSGH--T--SGVT-----SVSFSPDGKRLVSGSE---DGTIKVWD