Input parameters:

  Query = AT3G21540.1 (Len=955)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G21540.1, Len=955):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVKAYQRYDAATSFGVISSVDSNIAYDSTGKYVLAPALEKVGIWHVRQGVCSKTLTPSSSRGGPSLAVTSIASSASSLVA 80  
WD40-rpts            (_________________WD 1________________)          (________________WD 2____

Query       81 VGYADGSIRIWDTEKGTCEVNFNSHKGAVTALRYNKVGSMLASGSKDNDIILWDVVGESGLFRLRGHRDQVTDLVFLDGG 160 
WD40-rpts      ___________)   (_________________WD 3________________)   (_________________WD 4_

Query      161 KKLVSSSKDKFLRVWDLETQHCMQIVSGHHSEVWSVDTDPEERYVVTGSADQELRFYAVKEYSSNGSLVSDSNANEIKAS 240 
WD40-rpts      _______________)   (_________________WD 5________________)(_____________WD 6____

Query      241 EEHSTENKWEILKLFGEIQRQTKDRVARVRFNVSGKLLACQMAGKTIEIFRVLDEAEAKQKAKRRLRRKEKKSSKVGDEN 320 
WD40-rpts      _________) (_________________WD 7_________________)           (______________WD 

Query      321 STANGEASAKIELADAVSSPTVLDVFKLLQVIRAGRKISSFSFCPTAPKESLGTLALSLNNNSLEFYSLKSSENAKTVTI 400 
WD40-rpts      8_____________)(________________________WD 9_______________________)       (____

Query      401 EHQGHRSDVRSVTLSEDNTLLMSTSHSEVKIWNPSTGSCLRTIDSGYGLCSLIVPQNKYGIVGTKSGVLEIIDIGSATKV 480 
WD40-rpts      ____________WD10________________)(_________________WD11_________________)   (___

Query      481 EEVKAHGGTIWSITPIPNDSGFVTVSADHEVKFWEYQVKQKSGKATKKLTVSNVKSMKMNDDVLAVAISPDAKHIAVALL 560 
WD40-rpts      ______________WD12________________)                (________________WD13________

Query      561 DSTVKVFYMDSLKFYLSLYGHKLPVMCIDISSDGELIVTGSQDKNLKIWGLDFGDCHKSIFAHGDSVMGVKFVRNTHYLF 640 
WD40-rpts      _______)   (_________________WD14________________)   (_________________WD15_____

Query      641 SIGKDRLVKYWDADKFEHLLTLEGHHAEIWCLAISNRGDFLVTGSHDRSMRRWDRSEEPFFLEEEKEKRLEELFESEIDN 720 
WD40-rpts      ___________)   (_________________WD16________________)                          

Query      721 AADDRHGPMEEIPEEGVAALAGKKTIDVLSAADSIIDALEVAEDETKRHAAYEEEKTKGKVPEYLPNAVMFGLSPSEYVL 800 
WD40-rpts                                                                                      

Query      801 RAISNVRTNDLEQTLLALPFSDSLKFLCYMKDWSLIPEKVELVSRIATIILQTHHNQLVTTPSARPILSVLRDILYSEIK 880 
WD40-rpts                                                                                      

Query      881 ACKDTIGFNLAAMDHVKQMMDARSDAPFKDAKAKLLEIRSQQAKRMASRGDTKMEKKRKKKQKKLEEGQHGHALF 955 
WD40-rpts                                                                                 

16 WD40-repeats found in QUERY=AT3G21540.1 (Len=955):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-45       4.31  292.50  0.00710       10.0%     42.88
  WD 2:  Seg  6    56-92       5.95  360.38  0.00087       30.0%     39.95
  WD 3:  Seg  9    96-134      9.45  505.01  9.7e-06       35.0%     58.73
  WD 4:  Seg 13   138-176      9.20  494.72  1.3e-05       42.5%     58.28
  WD 5:  Seg 17   180-218      8.47  464.69  3.4e-05       32.5%     57.22
  WD 6:  Seg 21   219-250      3.63  264.74  0.01672       12.5%     40.30
  WD 7:  Seg 24   252-291      7.37  419.17  0.00014       20.0%     53.19
  WD 8:  Seg 28   303-335      2.88  233.59  0.04339       15.0%     37.32
  WD 9:  Seg 31   336-388      4.23  289.45  0.00780       15.0%     49.95
  WD10:  Seg 35   396-433      6.28  374.17  0.00056       32.5%     49.84
  WD11:  Seg 39   434-473      6.10  366.84  0.00071       12.5%     51.54
  WD12:  Seg 43   477-515      8.48  464.83  3.4e-05       20.0%     55.90
  WD13:  Seg 48   532-568      6.87  398.59  0.00026       25.0%     48.86
  WD14:  Seg 51   572-610      9.16  492.92  1.4e-05       32.5%     56.92
  WD15:  Seg 55   614-652      8.70  474.22  2.5e-05       30.0%     54.49
  WD16:  Seg 59   656-694      9.03  487.87  1.7e-05       37.5%     56.92

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-45     RYDA--------ATSFGVISSVDSNIAYDSTGKY-----VLAPALE-KVGIWH
   WD 2   56-92     TPS----------SSRGGPSLAVTSI-ASSASSL-----VAVGYADGSIRIWD
   WD 3   96-134    -GTC--------EVNFNSHKGAVTALRYNKVGSM-----LASGSKDNDIILWD
   WD 4  138-176    -ESG--------LFRLRGHRDQVTDLVFLDGGKK-----LVSSSKDKFLRVWD
   WD 5  180-218    -QHC--------MQIVSGHHSEVWSVDTDPEERY-----VVTGSADQELRFYA
   WD 6  219-250    ----------------VKEYSSNGSLVSDSNANE-----IKASEEHSTENKWE
   WD 7  252-291    LKLF--------GEIQRQTKDRVARVRFNVSGKL-----LACQMAGKTIEIFR
   WD 8  303-335    KRRL--------RRKEK-------KSSKVGDENS-----TANGEASAKIELAD
   WD 9  336-388    AVSSPTVLDVFKLLQVIRAGRKISSFSFCPTAPKESLGTLALSLNNNSLEFYS
   WD10  396-433    -KTV--------TIEHQGHRSDVRSVTLSEDNTL-----LMSTS-HSEVKIWN
   WD11  434-473    PSTG--------SCLRTIDSGYGLCSLIVPQNKY-----GIVGTKSGVLEIID
   WD12  477-515    -ATK--------VEEVKAHGGTIWSITPIPNDSG-----FVTVSADHEVKFWE
   WD13  532-568    SNV-----------KSMKMNDDVLAVAISPDAKH-----IAVALLDSTVKVFY
   WD14  572-610    -LKF--------YLSLYGHKLPVMCIDISSDGEL-----IVTGSQDKNLKIWG
   WD15  614-652    -GDC--------HKSIFAHGDSVMGVKFVRNTHY-----LFSIGKDRLVKYWD
   WD16  656-694    -FEH--------LLTLEGHHAEIWCLAISNRGDF-----LVTGSHDRSMRRWD

   WD40 Template    TGEC--------LRTLSGHTSGVTSVSFSPDGKR-----LVSGSEDGTIKVWD