Input parameters:

  Query = AT3G26480.1 (Len=764)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G26480.1, Len=764):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIRGGRNNITSAPAFSKDAKKLLLCTANTVSVYSVATGLKITSLEDHTAPVTSVIVDPSSDETVSYCWTSSLDGKIRIWE 80  
WD40-rpts      (______________WD 1______________)   (___________________WD 2__________________)

Query       81 FSAPKLLKIFDTHLPIHSLVMIPAQVSHSVIAYVSVEDYSSVSKDLFGQIRRYDLTQDPLHSGDTLKEMEEPKPIVLSPS 160 
WD40-rpts                 (___________________WD 3__________________)(__________________WD 4___

Query      161 GEFFGVCHNCSIHIWNVASEHLMPKETTLHHTELITVFAFHPNQRILAAGDVTGRVLIWKDNGIGEFTSVKTEDDTESCT 240 
WD40-rpts      _______________)(___________________WD 5___________________)               (____

Query      241 TFNWHSAEVTVLNFSSDGALLYSGVKAGDFVVWELGTGKKQLLPKIGSPLLYFIFSSDSTLSSVICADNQIHLLKMPSME 320 
WD40-rpts      _____________WD 6________________)     (_______________WD 7_______________)     

Query      321 ILRTISGIKPPTPERHGFICYVKTRDICLTRTVSIDRSSGIAAFCTANHRVQLYNLLSDHDISEVQICDHHPDDDDQVRV 400 
WD40-rpts                      (_________________WD 8________________)            (____________

Query      401 LVTAVALSRNGSVMTTAEARFAASNFSEGIVSLKFWVFVPDSKTFSLSTVINQPHREAAITAIALNPARSMAVSISSAGD 480 
WD40-rpts      _____WD 9_________________)                   (_________________WD10____________

Query      481 FKIWVCSSDKNLTPEDSNWICHGVGSYKRTPITAAVFSGDGSCLALAAKTVITIWHPLKNELLYVVGKANAPIMELSFTG 560 
WD40-rpts      ____)(_______________________WD11______________________)   (_________________WD1

Query      561 GGFLIAASHGSTPHLSVWDLMTFCLSWSYRLYIEAIATEVDSPYFAVLTWLPESDRLVKSNEQIFRGKDGAILLFDGSGP 640 
WD40-rpts      2_________________)   (_________________WD13________________)                  (

Query      641 KPVAIWTVMKARGGTLSFVEDGKKSQPLLAYVNRSHEYVLFDPYSDEKLETSAIDYEVFLAAISKKKKRSRKKALMSEKP 720 
WD40-rpts      ___________________WD14__________________)                                      

Query      721 WETMFCGSTLNFPPFPDLCASFFSSRMQKEVCERADRQPERHSS 764 
WD40-rpts                                                  

14 WD40-repeats found in QUERY=AT3G26480.1 (Len=764):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       5.98  361.56  0.00083       20.0%     42.93
  WD 2:  Seg  4    38-80       8.25  455.56  4.5e-05       40.0%     52.17
  WD 3:  Seg  9    92-134      5.49  341.61  0.00155       22.5%     50.47
  WD 4:  Seg 13   135-176      5.16  327.84  0.00237       12.5%     49.99
  WD 5:  Seg 17   177-220      8.27  456.10  4.4e-05       25.0%     49.68
  WD 6:  Seg 20   236-274      9.04  487.95  1.6e-05       37.5%     55.36
  WD 7:  Seg 24   280-315      6.72  392.13  0.00032       17.5%     52.06
  WD 8:  Seg 28   337-375      5.79  353.63  0.00107        7.5%     52.06
  WD 9:  Seg 33   388-427      6.03  363.71  0.00078       12.5%     20.72
  WD10:  Seg 36   447-485      7.51  424.73  0.00012       20.0%     50.48
  WD11:  Seg 40   486-536      5.92  359.32  0.00089       25.0%     51.28
  WD12:  Seg 44   540-579      7.17  410.91  0.00018       20.0%     52.67
  WD13:  Seg 48   583-621      4.94  318.62  0.00316       10.0%     30.32
  WD14:  Seg 53   640-682      6.28  374.18  0.00056       17.5%     52.19

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     -----------------MIR---GGRNNITSAPAFSKDAKK----LLL----C-TAN-TVSVYS
   WD 2   38-80     -GL------------KITSL---EDHTAPVTSVIVDPSSDE----TVSYCWTS-SLDGKIRIWE
   WD 3   92-134    THL------------PIHSLVMIPAQVSHSVIAYVSVEDYS----SVS----K-DLFGQIRRYD
   WD 4  135-176    LTQ---------DPLHSGDT---LKEMEEPKPIVLSPSGEF----FGV------CHNCSIHIWN
   WD 5  177-220    VAS--------EHLMPKETT---LHHTELITVFAFHPNQRI----LAA----G-DVTGRVLIWK
   WD 6  236-274    -TE------------SCTTF---NWHSAEVTVLNFSSDGAL----LYS----G-VKAGDFVVWE
   WD 7  280-315    ----------------KQLL---PKIGSPLLYFIFSSDSTL----SSV----I-CADNQIHLLK
   WD 8  337-375    -GF------------ICYVK---TRDICLTRTVSIDRSSGI----AAF----C-TANHRVQLYN
   WD 9  388-427    CDH------------HPDDD---DQVRVLVTAVALSRNGSV----MTT----A-EARFAASNFS
   WD10  447-485    -LS------------TVINQ---PHREAAITAIALNPARSM----AVS----I-SSAGDFKIWV
   WD11  486-536    CSSDKNLTPEDSNWICHGVG---SYKRTPITAAVFSGDGSC----LAL----A-A-KTVITIWH
   WD12  540-579    -NE------------LLYVV---GKANAPIMELSFTGGGFL----IAA----SHGSTPHLSVWD
   WD13  583-621    -FC------------LSWSY---RLYIEAIATEVDSPYFAV----LTW----L-PESDRLVKSN
   WD14  640-682    -PK------------PVAIW---TVMKARGGTLSFVEDGKKSQPLLAY----V-NRSHEYVLFD

   WD40 Template    TGE------------CLRTL---SGHTSGVTSVSFSPDGKR----LVS----G-SEDGTIKVWD