Input parameters:

  Query = AT3G26640.1 (Len=346)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G26640.1, Len=346):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVTSSDQIQNGSEEQSKRSEIYTYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGEIRSDPNLCFEH 80  
WD40-rpts                                                                           (__________

Query       81 PYPPTKTSFIPDKECQRPDLLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSGPITSFDWNEAEPRRIGTSSIDTTC 160 
WD40-rpts      _________WD 1__________________)(_______________________WD 2____________________

Query      161 TIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVSEDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPRYMAT 240 
WD40-rpts      ___)   (________________WD 3________________)(_____________________WD 4_________

Query      241 VIMGSAKIVVLDIRFPALPVVELQRHQASVNAIAWAPHSSSHICSAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEV 320 
WD40-rpts      ___________)    (_________________WD 5_________________)          (_____________

Query      321 EQLQWSSSQPDWVAIAFSNKLQILRV 346 
WD40-rpts      ____WD 6________________) 

6 WD40-repeats found in QUERY=AT3G26640.1 (Len=346):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    70-112      4.01  280.42  0.01031       17.5%     29.45
  WD 2:  Seg  8   113-164      4.78  312.03  0.00388       22.5%     38.70
  WD 3:  Seg 11   168-205      5.93  359.55  0.00089       27.5%     50.84
  WD 4:  Seg 15   206-252      3.06  240.88  0.03475       12.5%     49.37
  WD 5:  Seg 19   257-296      6.60  387.13  0.00038       20.0%     47.36
  WD 6:  Seg 23   307-345      2.91  234.95  0.04164       10.0%     44.05

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   70-112    IRS-----------DPNLCFEHPYPPTKTSFIP-DKECQRPDLLATSS-DFLRLWR
   WD 2  113-164    ISDDESRVELKSCLSSDKNSEFSGPITSFDWNEAEPRRI---GTSSID-TTCTIWD
   WD 3  168-205    -EV-----------VDTQLIAHDKEVYDIAWGG-VG-VF---ASVSED-GSVRVFD
   WD 4  206-252    LRD------KEHSTIIYESGEPSTPLVRLSWNKQDPRYM---ATVIMGSAKIVVLD
   WD 5  257-296    -AL-----------PVVELQRHQASVNAIAWAPHSSSHI---CSAGDD-SQALIWD
   WD 6  307-345    -GL-----------DPILAYTAGAEVEQLQWSS-SQPDW---VAIAFS-NKLQILR

   WD40 Template    TGE-----------CLRTLSGHTSGVTSVSFSP-DGKRL---VSGSED-GTIKVWD