Input parameters:

  Query = AT3G27640.1 (Len=535)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G27640.1, Len=535):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRDHTAQKIQYPAGFRDSPMESSRSRSVFVNIGLRELNGFRVRKRPFFADSELICREIAGVAVEHDGIWTPPLAVSFCKT 80  
WD40-rpts                                                                (__________________WD 

Query       81 SRNSQLFAVSDEDGHVSLFNSSSKKFASSATHQENTEKARFRDWIAHYNAIFDISWIKGDSCLLTASGDQTIKVWDVEEN 160 
WD40-rpts      1__________________)                 (_________________WD 2________________)   (

Query      161 KCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWDLRCKSSSHKEEFCINSTGMVKGAHLSPLSKRIRRRKAASSS 240 
WD40-rpts      _________________WD 3_________________)                            (____________

Query      241 ITSVLYVKDEITIATAGAPDSALKFWDIRKLKAPFAQASPQSDPTNTKEKRSHGIVSLSQDSSGTYLTASCKDNRIYLYN 320 
WD40-rpts      _____WD 4_________________)              (_________________WD 5________________)

Query      321 TLRLDKGPVQSFSGCRIDSFFVRTMISPDGEYVLSGSSDGNAYIWQVNKPQVDPIILKGHDFEVTAVDWSPSEIGKVATA 400 
WD40-rpts           (__________________WD 6_________________)(___________________WD 7__________

Query      401 SDDFTVRLWNIENNICTNANATASVSRVKRRVTALSNTEAKERLEMNRETESPQKHSSLSSDDDYNNDQSMPIIRTPESQ 480 
WD40-rpts      _________)(_________________WD 8_________________)      (_________________WD 9__

Query      481 KKKTSSSSSLSSLSSEEDIICERTPETTFNSPSSVLNPPSSVKRRTIRDYFLVTP 535 
WD40-rpts      ______________)   (______________WD10_____________)    

10 WD40-repeats found in QUERY=AT3G27640.1 (Len=535):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    59-100      7.61  428.91  0.00010       15.0%     46.05
  WD 2:  Seg  9   118-156      8.29  457.05  4.3e-05       30.0%     46.56
  WD 3:  Seg 12   160-199      9.04  488.27  1.6e-05       42.5%     55.58
  WD 4:  Seg 18   228-267      8.35  459.69  4.0e-05       27.5%     51.76
  WD 5:  Seg 22   282-320      7.83  438.03  7.8e-05       20.0%     44.82
  WD 6:  Seg 25   326-366      7.91  441.44  7.0e-05       32.5%     53.78
  WD 7:  Seg 29   367-410      7.82  437.72  7.8e-05       30.0%     47.15
  WD 8:  Seg 32   411-450      8.13  450.54  5.3e-05       12.5%     33.09
  WD 9:  Seg 36   457-495      7.09  407.72  0.00020        5.0%     42.62
  WD10:  Seg 39   499-531      3.20  246.75  0.02905       20.0%     31.09

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   59-100    AGV---AVEHDGIWTPP--LAVSFCKTSR-N-SQLFA-VSDEDGHVSLFN
   WD 2  118-156    -KA---RFR--DWIAHY--NAIFDISWIK-G-DSCLL-TASGDQTIKVWD
   WD 3  160-199    -NK---CTG--VLIGHT--GTVKSMCSHPTN-SDLLV-SGSRDGCFALWD
   WD 4  228-267    -SK---RIR--RRKAAS--SSITSVLYVK-D-EITIATAGAPDSALKFWD
   WD 5  282-320    -SD---PTN--TKEKRS--HGIVSLSQDS-S-GTYLT-ASCKDNRIYLYN
   WD 6  326-366    -KG---PVQ--SFSGCRIDSFFVRTMISP-D-GEYVL-SGSSDGNAYIWQ
   WD 7  367-410    VNKPQVDPI--ILKGHD--FEVTAVDWSP-SEIGKVA-TASDDFTVRLWN
   WD 8  411-450    IEN---NIC--TNANAT--ASVSRVKRRV-T-ALSNT-EAKERLEMNRET
   WD 9  457-495    -SS---LSS--DDDYNN--DQSMPIIRTP-E-SQKKK-TSSSSSLSSLSS
   WD10  499-531    -II---CER--TPETTF--NSPSSVLNPP-S-SVK-------RRTIRDYF

   WD40 Template    TGE---CLR--TLSGHT--SGVTSVSFSP-D-GKRLV-SGSEDGTIKVWD