WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT3G33530.2 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT3G33530.2 (Len=1358) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT3G33530.2, Len=1358): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MAASKPSPTDTWDSTLPGPPSRNNFGSADLSPSGLFAFASGSSVSVVDSRSLQLVSTIPLPPPPGALSPFVTSVRWIPLP 80
WD40-rpts (___
Query 81 LPRDLLSTEPSASHLLLAVADRHGRVALVDFHLRSVVVWLNPSSDPKLGIQDLCWVQARHDSHVLAAISGSSFLSLYTTS 160
WD40-rpts ___________WD 1______________) (____________________WD 2___________________)
Query 161 GGLFWKYDAGTEILSCLRRDPYDSRHFCVLGLKGFLLSVKVLGDSENDVVIQEMQIKTDFSELPRLEREAASNGNSSSSS 240
WD40-rpts (_________________WD 3_________________) (___
Query 241 PASAAFPLYFARFAFSPHWKNILFVTFPRELLVFDLQYETPLSTTPLPRGCAKFLDILPDPNKELLYCGHVDGRLSIWRR 320
WD40-rpts ______________WD 4________________)(___________________WD 5___________________)
Query 321 KEGEQVHVMCTMEEFMPSIGMSIPSPSALAVLLSHSDSTMQTITKIHPDGTSSIDFDNPFDFYDESLLVSKTTFISLSDD 400
WD40-rpts (_______________WD 6_________
Query 401 GKIWKWVLSAEGVEDALKNASDLDMGIGATEAALPGAIQENDSSSLDDELVVAPTNRSRGHTSGSSMEKSDLSFKKFGVT 480
WD40-rpts ______) (_________________WD 7_________________)
Query 481 RAYTCLLRSMQISLTGQLQLLSSTVSTLAVPSPSLTATLARGGNIPAAAVPLVALGTQSGTIDVVDVSTNAVAASTSVHT 560
WD40-rpts (________________WD 8_______________) (__________
Query 561 GVVRGLRWLGNSRLVSFSYSQVNDKSRGYINRLVVTCLRSGLNKPFRDLQKPERTPIRALRTSSSGRSSRILLHYFKDEE 640
WD40-rpts ___________WD 9_____________________) (___________________________WD10__________
Query 641 LLYLLILFRDAPVEVWAMTKHPVMLRSLALPFTVVEWTLPAVPRPGQGGPSKQSLSASEGVTASGDSWAVIDIFSASVGS 720
WD40-rpts ________________) (________________
Query 721 DGSQEETVESFAFALVNGALGVFEVQGRRIRDFRPKWPSTSFVPSDGLVTAMAYRLPHVVMGDRSGNIRWWDVTTGQSSA 800
WD40-rpts __WD11_________________) (_________________WD12_________________) (_____
Query 801 FNSHRDGIRRIKFSPVVAGDRSRGRVAVLFNDNTFSVFDLDSPDPLAQSLLQPQIPGTLVLELDWLPLRTDKNDPLVLCI 880
WD40-rpts _______________WD13___________________) (_________________WD14______
Query 881 AGADSTFRLVEVTVNEKKAGFVPQSKSVKERFRPMPMYSPILLPVPHALALRMILQLGVKPSWFNTSSTTLEKRPHLIRG 960
WD40-rpts __________)
Query 961 MASSSKDLRSYMIQLPPLGDPVVPEMLLKILEPYRKEGCLLDDERAKLYADVVKKGYAARFAFAASVFGETSEALFWLQL 1040
WD40-rpts
Query 1041 PQAIRHLMNKLTRRSPQKISSPTLDSGADEVAMPSKIPSTGLSSPEARKIDSMCDGSLRLMAFEREELRTRANERLPWHE 1120
WD40-rpts
Query 1121 KLDGEDCIQKQVHELISVGNLEAAVSLLLSSAPDSPYFYPNALRAVALASAVSKSLLDLALKVVAANMVRTDNSLTGTHL 1200
WD40-rpts
Query 1201 LCAVGRHQEACSQLQDSGRWTDAATLAATHLEGSDYARVLQRWADHVLHAEHNVWRALILYVAAGSLQEALAALREVQQP 1280
WD40-rpts
Query 1281 DTVAMFVLACQEIHSEIITELSTQDEESESASGDGTVPLPDLPGLESGKEEVTAVCEYFQQYQRKLVHLCMDSQPYTD 1358
WD40-rpts
 14 WD40-repeats found in QUERY=AT3G33530.2 (Len=1358): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 77-110 4.33 293.57 0.00687 12.5% 23.04 WD 2: Seg 7 114-158 3.84 273.34 0.01283 10.0% 35.93 WD 3: Seg 11 161-200 3.96 278.38 0.01098 12.5% 46.55 WD 4: Seg 16 237-275 4.73 310.03 0.00412 15.0% 36.38 WD 5: Seg 19 276-319 4.47 299.49 0.00572 17.5% 47.98 WD 6: Seg 26 372-407 5.04 322.66 0.00279 17.5% 32.52 WD 7: Seg 28 409-448 5.18 328.51 0.00233 10.0% 4.20 WD 8: Seg 31 510-546 3.40 255.20 0.02242 20.0% 16.47 WD 9: Seg 33 550-597 4.16 286.38 0.00858 25.0% 33.93 WD10: Seg 37 599-657 2.85 232.45 0.04492 10.0% 31.60 WD11: Seg 43 704-744 3.39 254.60 0.02284 12.5% 23.50 WD12: Seg 47 753-792 4.34 294.01 0.00677 20.0% 32.22 WD13: Seg 51 795-839 5.02 322.12 0.00284 25.0% 46.11 WD14: Seg 54 853-891 3.78 270.61 0.01396 15.0% 19.85Multiple sequence alignment of 14 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 77-110 ----------IPLP-------------------LPRDLLS---------TE------PSA-S------H-LLLAVADRHGRVALVD WD 2 114-158 -RS----VVVWLNP-------------------SSDPKLG---------IQDLCWVQARH-D------S-HVLAAISGSSFLSLYT WD 3 161-200 -GG----LFWKYDA-------------------GTEILSC---------LR------RDPYD------S-RHFCVLGLKGFLLSVK WD 4 237-275 -SS----SSPASAA-------------------FPLYFAR---------FA------FSP-H------W-KNILFVTFPRELLVFD WD 5 276-319 LQYETPLSTTPLPR-------------------GCAKFLD---------IL------PDP-N------K-ELLYCGHVDGRLSIWR WD 6 372-407 --------SSIDFD-------------------NPFDFYD---------ES------LLV-S------K-TTFISLSDDGKIWKWV WD 7 409-448 SAE----GVEDALK-------------------NASDLDM---------GI------GAT-E------A-ALPGAIQENDSSSLDD WD 8 510-546 VPS----PSLT----------------------ATLARGG---------NI------PAA-A------V-PLVALGTQSGTIDVVD WD 9 550-597 -NA----VAASTSV-------------------HTGVVRGLRWLGNSRLVS------FSY-S------Q-VNDKSRGYINRLVVTC WD10 599-657 RSG----LNKPFRDLQKPERTPIRALRTSSSGRSSRILLH---------YF------KDE-E------L-LYLLILFRDAPVEVWA WD11 704-744 SGD----SWAVIDI-------------------FSASVGS---------DG------SQE-E------TVESFAFALVNGALGVFE WD12 753-792 FRP----KWPSTSF-------------------VPSDGLV---------TA------MAY-R------L-PHVVMGDRSGNIRWWD WD13 795-839 -TG----QSSAFNS-------------------HRDGIRR---------IK------FSP-VVAGDRSR-GRVAVLFNDNTFSVFD WD14 853-891 -PQ----IPGTLVL-------------------ELDWLPL---------RT------DKN-D------P-LVLCIAGADSTFRLVE WD40 Template TGE----CLRTLSG-------------------HTSGVTS---------VS------FSP-D------G-KRLVSGSEDGTIKVWD |
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