WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT3G33530.3 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT3G33530.3 (Len=1376) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT3G33530.3, Len=1376): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MAASKPSPTDTWDSTLPGPPSRNNFGSADLSPSGLFAFASGSSVSVVDSRSLQLVSTIPLPPPPGALSPFVTSVRWIPLP 80
WD40-rpts (___
Query 81 LPRDLLSTEPSASHLLLAVADRHGRVALVDFHLRSVVVWLNPSSDPKLGIQDLCWVQARHDSHVLAAISGSSFLSLYTTS 160
WD40-rpts ___________WD 1______________) (____________________WD 2___________________)
Query 161 GGLFWKYDAGTEILSCLRRDPYDSRHFCVLGLKGFLLSVKVLGDSENDVVIQEMQIKTDFSELPRLEREAASNGNSSSSS 240
WD40-rpts (_________________WD 3_________________) (___
Query 241 PASAAFPLYFARFAFSPHWKNILFVTFPRELLVFDLQYETPLSTTPLPRGCAKFLDILPDPNKELLYCGHVDGRLSIWRR 320
WD40-rpts ______________WD 4________________)(___________________WD 5___________________)
Query 321 KEGEQVHVMCTMEEFMPSIGMSIPSPSALAVLLSHSDSTMQTITKIHPDGTSSIDFDNPFDFYDESLLVSKTTFISLSDD 400
WD40-rpts (__________________WD 6_________________) (_________________WD 7__________
Query 401 GKIWKWVLSAEGVEDALKNASDLDMGIGATEAALPGAIQENDSSSLDDELVVAPTNRSRGHTSGSSMEKSDLSFKKFGVT 480
WD40-rpts ______) (_________________WD 8_________________)
Query 481 RAYTCLLRSMQISLTGQLQLLSSTVSTLAVPSPSLTATLARGGNIPAAAVPLVALGTQSGTIDVVDVSTNAVAASTSVHT 560
WD40-rpts (_______________________WD 9_______________________) (__________
Query 561 GVVRGLRWLGNSRLVSFSYSQVNDKSRGYINRLVVTCLRSGLNKPFRDLQKPERTPIRALRTSSSGRSSRILLHYFKDEE 640
WD40-rpts ___________WD10_____________________)
Query 641 LLYLLILFRDAPVEVWAMTKHPVMLRSLALPFTVVEWTLPAVPRPGQGGPSKQSLSASEGVTASGDSSSVGSDGSQEETV 720
WD40-rpts
Query 721 ESFAFALVNGALGVFEVQGRRIRDFRPKWPSTSFVPSDGLVTAMAYRLPHVVMGDRSGNIRWWDVTTGQSSAFNSHRDGI 800
WD40-rpts (_____________________WD11____________________) (_____________
Query 801 RRIKFSPVVAGDRSRGRVAVLFNDNTFSVFDLVSLKRIQYFPSICAHVLWFQRWCTNIDSPDPLAQSLLQPQIPGTLVLE 880
WD40-rpts _______WD12___________________) (_________
Query 881 LDWLPLRTDKNDPLVLCIAGADSTFRLVEVTVNEKKAGFVPQSKSVKERFRPMPMYSPILLPVPHALALRMILQLGVKPS 960
WD40-rpts ________WD13________________)
Query 961 WFNTSSTTLEKRPHLIRGMASSSKDLRSYMIQLPPLGDPVVPEMLLKILEPYRKEGCLLDDERAKLYADVVKKGYAARFA 1040
WD40-rpts
Query 1041 FAASVFGETSEALFWLQLPQAIRHLMNKLTRRSPQKISSPTLDSGADEVAMPSKIPSTGLSSPEARKIDSMCDGSLRLMA 1120
WD40-rpts
Query 1121 FEREELRTRANERLPWHEKLDGEDCIQKQVHELISVGNLEAAVSLLLSSAPDSPYFYPNALRAVALASAVSKSLLDLALK 1200
WD40-rpts
Query 1201 VVAANMVRTDNSLTGTHLLCAVGRHQEACSQLQDSGRWTDAATLAATHLEGSDYARVLQRWADHVLHAEHNVWRALILYV 1280
WD40-rpts
Query 1281 AAGSLQEALAALREVQQPDTVAMFVLACQEIHSEIITELSTQDEESESASGDGTVPLPDLPGLESGKEEVTAVCEYFQQY 1360
WD40-rpts
Query 1361 QRKLVHLCMDSQPYTD 1376
WD40-rpts
 13 WD40-repeats found in QUERY=AT3G33530.3 (Len=1376): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 77-110 4.40 296.52 0.00627 12.5% 20.61 WD 2: Seg 7 114-158 3.97 278.45 0.01096 10.0% 35.94 WD 3: Seg 11 161-200 3.73 268.70 0.01480 12.5% 44.52 WD 4: Seg 16 237-275 5.29 333.23 0.00201 15.0% 36.86 WD 5: Seg 19 276-319 4.52 301.22 0.00542 17.5% 44.96 WD 6: Seg 23 322-362 3.35 253.11 0.02391 15.0% 22.99 WD 7: Seg 26 369-407 4.30 292.10 0.00718 17.5% 30.56 WD 8: Seg 28 409-448 3.24 248.50 0.02754 10.0% -1.86 WD 9: Seg 30 495-546 4.85 315.17 0.00352 22.5% 13.72 WD10: Seg 33 550-597 4.50 300.71 0.00550 25.0% 32.35 WD11: Seg 44 738-784 4.57 303.53 0.00504 25.0% 46.41 WD12: Seg 48 787-831 5.15 327.56 0.00240 25.0% 48.81 WD13: Seg 54 871-909 4.45 298.37 0.00592 15.0% 26.61Multiple sequence alignment of 13 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 77-110 -------------------------------IPLPLPRDLLS---------TE------PS-A-S------HLLLAVADRHGRVALVD WD 2 114-158 -RS----VV------------V---------WLNPSSDPKLG---------IQDLCWVQAR-H-D------SHVLAAISGSSFLSLYT WD 3 161-200 -GG----LF------------W---------KYDAGTEILSC---------LR------RD-PYD------SRHFCVLGLKGFLLSVK WD 4 237-275 -SS----SS------------P---------ASAAFPLYFAR---------FA------FS-P-H------WKNILFVTFPRELLVFD WD 5 276-319 LQYETPLST------------T---------PLPRGCAKFLD---------IL------PD-P-N------KELLYCGHVDGRLSIWR WD 6 322-362 EGE----QV------------H---------VMCTMEEFMPS---------IG------MSIP-S------PSALAVLLSHSDSTMQT WD 7 369-407 -DG----TS------------S---------IDFDNPFDFYD---------ES------LL-V-S------KTTFISLSDDGKIWKWV WD 8 409-448 SAE----GV------------E---------DALKNASDLDM---------GI------GA-T-E------AALPGAIQENDSSSLDD WD 9 495-546 TGQ----LQLLSSTVSTLAVPS---------PSLTATLARGG---------NI------PA-A-A------VPLVALGTQSGTIDVVD WD10 550-597 -NA----VA------------A---------STSVHTGVVRGLRWLGNSRLVS------FS-Y-S------QVNDKSRGYINRLVVTC WD11 738-784 QGR----RI------------RDFRPKWPSTSFVPSDGLVTA---------MA------YR-L-P--------HVVMGDRSGNIRWWD WD12 787-831 -TG----QS------------S---------AFNSHRDGIRR---------IK------FS-P-VVAGDRSRGRVAVLFNDNTFSVFD WD13 871-909 -PQ----IP------------G---------TLVLELDWLPL---------RT------DK-N-D------PLVLCIAGADSTFRLVE WD40 Template TGE----CL------------R---------TLSGHTSGVTS---------VS------FS-P-D------GKRLVSGSEDGTIKVWD |
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