Input parameters:

  Query = AT3G42660.1 (Len=953)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G42660.1, Len=953):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKSRSLKLREAHKVGGSAAFCSILWDHKAEHFVTSSSSDPSISVHDGLSTSTLPPTILRHHQDGVTSLALSNDSTLLASG 80  
WD40-rpts      (____________________WD 1____________________)(___________________WD 2__________

Query       81 SIDHCVKLYKFPSGEFQTNITRFTLPIRVLAFNGSGSLLAAAGDDEGIKLINTFDGSIVRVLKGHKGPVTGLDFHPNGEL 160 
WD40-rpts      _________)   (_________________WD 3________________)   (_________________WD 4___

Query      161 LASIDTTGTVLCWELQNGVVSFTLKGVAPDTGFNTSIVNIPRWSPDGRTLAVPGLRNDVVMYDRFTGEKLFALRGDHLEA 240 
WD40-rpts      _____________)          (_________________WD 5________________)   (_____________

Query      241 ICYLTWAPNGKYIATSGLDKQVLLWDVDKKQDIDRHKFEERICCMSWKPNGNALSVIDAKGRYGVWESLVPSSMLSPTVG 320 
WD40-rpts      ____WD 6_________________)  (_________________WD 7________________)             

Query      321 VPDIVPKKRNEILDFDDEVEEEIYRASESLDDAMGDSDDGESHHTSRKRLRKKTLIDEDVDDAYEELNDGSSLPSASEYR 400 
WD40-rpts                                                                                      

Query      401 KKSHRGHREKQGARSGAFKGISASTKYKMQSSFQPGATPPEPGKRTFLCYNMLGCITTIEHEGNSRIETDFHDTGRGPRV 480 
WD40-rpts                                                                                      

Query      481 SSMIDIYGFTMASINETGCVFANPCKGEKNMSVLMYRPFRSWASNSEWTMRFEGEEVKVVANGSGWVAAVTSLNLLRVFS 560 
WD40-rpts                                                                                      

Query      561 EGGLQKHILSLDGPVVTAVGCKDHLAVVTHVSDCLPSNEQVMEFRVFNISKMTQELKGRVALTPGSRLTWIGFSEEGSLS 640 
WD40-rpts                (________________WD 8________________)                                

Query      641 SYDSEGVLRVFTSQYGGSWIPVFSTSKEKKQEENYWVVGLNTSSLYCIACKYAEMFPQVTPKPILTILDLSLPLASSDLG 720 
WD40-rpts                                                                                      

Query      721 AASLENELILKQLRLYETQRKVDDMALVGVDTTALEDEAFDLEVSQDKCILRLISSCCSSDSFARASELMELLTLEKSMR 800 
WD40-rpts                                                                                      

Query      801 AAITLVTKLKLPFLAEKFSSILEERLLEEASEAAVTNPALNPNGEVVTRVESKVQNPPASIQTSENTEAVMKSSATKLSA 880 
WD40-rpts                                                                                      

Query      881 PTLLKKSKVSEGLKLGKEQTKKDKSDDAKIKEIKKLNLKNPVNNVNKEDKGQEKEVNQGEARRSSNPFLKSTV 953 
WD40-rpts                                                                               

8 WD40-repeats found in QUERY=AT3G42660.1 (Len=953):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-46       5.20  329.57  0.00225       22.5%     46.97
  WD 2:  Seg  4    47-90       6.89  399.35  0.00026       35.0%     48.32
  WD 3:  Seg  7    94-132      7.22  412.76  0.00017       22.5%     57.75
  WD 4:  Seg 11   136-174      9.29  498.22  1.2e-05       37.5%     57.03
  WD 5:  Seg 16   185-223      6.35  377.09  0.00052       25.0%     37.14
  WD 6:  Seg 19   227-266      7.33  417.45  0.00015       30.0%     58.47
  WD 7:  Seg 23   269-307      5.72  350.92  0.00116       17.5%     53.14
  WD 8:  Seg 42   571-608      3.94  277.58  0.01125       17.5%     22.72

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-46     MKSR----SLKLREAHKVG-GSAAFCSILWDHKAEHFVTSSSSDPSISVHD
   WD 2   47-90     GLSTSTLPPTILR-----H-HQDGVTSLALSNDSTL-LASGSIDHCVKLYK
   WD 3   94-132    -GEF----QTNIT-----R-FTLPIRVLAFNGSGSL-LAAAGDDEGIKLIN
   WD 4  136-174    -GSI----VRVLK-----G-HKGPVTGLDFHPNGEL-LASIDTTGTVLCWE
   WD 5  185-223    KG-V----APDTG-----F-NTSIVNIPRWSPDGRT-LAVPGLRNDVVMYD
   WD 6  227-266    -GEK----LFALR-----GDHLEAICYLTWAPNGKY-IATSGLDKQVLLWD
   WD 7  269-307    -KKQ----DIDRH-----K-FEERICCMSWKPNGNA-LSVIDAKGRYGVWE
   WD 8  571-608    LDGP----VVTAV-----G-CKDHLAVVTHVSDC---LPSNEQVMEFRVFN

   WD40 Template    TGEC----LRTLS-----G-HTSGVTSVSFSPDGKR-LVSGSEDGTIKVWD