Input parameters:

  Query = AT3G44530.1 (Len=1058)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G44530.1, Len=1058):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIAEKPFWVKHEGLQIFSIDVQPNGERFATGGGDHKVRIWNMKSVDKDLQNIDTKERLLATLRDHFGSVNCVRWAKNSRY 80  
WD40-rpts       (_________________WD 1_________________)              (_________________WD 2___

Query       81 VASGSDDQVIQIHERKPGSGTTEFGSGEAPDVENWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRTGMCT 160 
WD40-rpts      _____________)                    (_________________WD 3________________)   (___

Query      161 TVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAHRTDGHWAKSLGSTFFRRLGWSPCGHFLTTTHGFQKPK 240 
WD40-rpts      ______________WD 4________________)          (__________________WD 5____________

Query      241 HSAPVLERGEWSVAYDFLGHSAPIIVVRFNHSMFKRIPSSTHETKQVGWSNGTSKSGEKDLQSYNVIAMGSQDRTITVWT 320 
WD40-rpts      ______)(___________________WD 6__________________)(____________WD 7____________)

Query      321 TGSARPLFVAKHFFGQSVVDLSWSPDGYSLFACSLDGTVAMIHFDPKELGVRLTDTELDELKKSRYGDVRGRQANLVESP 400 
WD40-rpts      (___________________WD 8__________________)   (_______________________WD 9______

Query      401 AQLLLETASTKQAGSKRAASDVQQNQVTTKPSVSVESTAKRRKSQVDDRNKAAESTGQTLNKASTLNRVSSPVNQKVYRR 480 
WD40-rpts      _________________)                                                              

Query      481 PDGRKRIIPEAVGVPQQENNIMINGESHNFLPASAAAPAKGDSGDFPVEISNRDLSGKEIVCRNPDLKERSRITARATIT 560 
WD40-rpts                                                                                      

Query      561 ESLVIEKVPGTSGRDGVLNVEQSVGIKESSSTDLLIRVFDWKDGEAAPPVCLEACPREHALDTVGAVSTSMVKETEISCK 640 
WD40-rpts                                                                                      

Query      641 KSGETLWSDRIMGRVTVLAGNPNFWAAGCEDGSLQVYTKCGRRAMPTMMMGSAATFIDCDDSWKLLLVTRKGSLYVWDLF 720 
WD40-rpts      (________________WD10________________)(_________________WD11_________________)  

Query      721 NRKCVLHDSLSSLVSSDVNLSSTVKVKRMKNWYLLIFLVGDLVVELLSWYEDSSVIDLDCTIKVISVKLSKSGSPLVVLA 800 
WD40-rpts       (_________________WD12________________)        (_____________________WD13______

Query      801 TRHAFLFDTSLMCWLRVADDCFPASNFSSSWNLGSAPCGELAGLQVDVRKYMARKPGWNRITDDGTQTRAHLESQLASSL 880 
WD40-rpts      ______________)                                                                 

Query      881 ALESPNEYRQCLLAYVRFLAREADESRLREVCESFLGPPTGMAEAASSDTNLSWDPYVLGVKKHKLLRNDILPAMASNRK 960 
WD40-rpts                                                                                      

Query      961 VQRLLNEFIDLLSEYEDVETADPAPKGSTPTMNCGGVPSSLDQIGSDPPAMTATTPMTIDNDKPVSLENPAALDIGVCEK 1040
WD40-rpts                                                                                      

Query     1041 TGSEDRDKQDQNSRDSGS 1058
WD40-rpts                        

13 WD40-repeats found in QUERY=AT3G44530.1 (Len=1058):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       7.37  418.99  0.00014       20.0%     52.56
  WD 2:  Seg  5    56-94       7.77  435.49  8.4e-05       27.5%     46.42
  WD 3:  Seg  8   115-153      8.69  473.59  2.6e-05       40.0%     56.67
  WD 4:  Seg 12   157-195      9.38  502.08  1.1e-05       37.5%     57.46
  WD 5:  Seg 17   206-247      3.64  264.93  0.01663       17.5%     37.30
  WD 6:  Seg 20   248-290      5.99  362.01  0.00082       25.0%     40.28
  WD 7:  Seg 24   291-320      3.65  265.41  0.01638       20.0%     28.99
  WD 8:  Seg 26   321-363      7.07  406.67  0.00021       32.5%     57.49
  WD 9:  Seg 30   367-418      3.28  249.98  0.02632       15.0%     28.29
  WD10:  Seg 38   641-678      4.42  297.09  0.00616       17.5%     39.69
  WD11:  Seg 42   679-718      4.88  316.19  0.00341       15.0%     43.67
  WD12:  Seg 45   722-760      3.26  249.16  0.02698       15.0%     22.58
  WD13:  Seg 49   769-815      3.58  262.71  0.01780       27.5%     39.61

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     IAE---KPFWVKHEG-------------LQIFSIDVQPNG-ERFATGGG------DH----KVRIWN
   WD 2   56-94     -ER---LLATLRDHF-------------GSVNCVRWAKNS-RYVASGSD------DQ----VIQIHE
   WD 3  115-153    -WK---AVMTLRGHT-------------ADVVDLNWSPDD-SMLASGSL------DN----TVHIWN
   WD 4  157-195    -GM---CTTVLRGHL-------------SLVKGVTWDPIG-SFIASQSD------DK----TVIIWR
   WD 5  206-247    DGH---WAKSLG--S-------------TFFRRLGWSPCG-HFLTTTHG------FQKPKHSAPVLE
   WD 6  248-290    RGE-WSVAYDFLGHS-------------APIIVVRFNHSMFKRIPSSTH------ET----KQVGWS
   WD 7  291-320    NG--------------------------TSKSGEKDLQSY-NVIAMGSQ------DR----TITVWT
   WD 8  321-363    TGSARPLFVAKHFFG-------------QSVVDLSWSPDG-YSLFACSL------DG----TVAMIH
   WD 9  367-418    -KE---LGVRLTDTELDELKKSRYGDVRGRQANLVESPAQ-LLLETAST------KQ----AGSKRA
   WD10  641-678    --K---SGETLWSDR-------------IMGRVTVLAGNP-NFWAAGCE------DG----SLQVYT
   WD11  679-718    KCG---RRAMPTMMM-------------GSAATFIDCDDS-WKLLLVTR------KG----SLYVWD
   WD12  722-760    -RK---CVLHDSLSS-------------LVSSDVNLSSTV-KVKRMKNW------YL----LIFLVG
   WD13  769-815    WYE--DSSVIDLDCT-------------IKVISVKLSKSG-SPLVVLATRHAFLFDT----SLMCWL

   WD40 Template    TGE---CLRTLSGHT-------------SGVTSVSFSPDG-KRLVSGSE------DG----TIKVWD