Input parameters:

  Query = AT3G44530.2 (Len=1040)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G44530.2, Len=1040):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIAEKPFWVKHEGLQIFSIDVQPNGERFATGGGDHKVRIWNMKSVDKDLQNIDTKERLLATLRDHFGSVNCVRWAKNSRY 80  
WD40-rpts       (_________________WD 1_________________)                  (_______________WD 2_

Query       81 VASGSDDQVIQIHERKPGSGTTEFGSGEAPDVENWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRTGMCT 160 
WD40-rpts      _____________)                    (_________________WD 3________________)   (___

Query      161 TVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAHRTDGHWAKSLGSTFFRRLGWSPCGHFLTTTHGFQKPK 240 
WD40-rpts      ______________WD 4________________)          (__________________WD 5____________

Query      241 HSAPVLERGEWSVAYDFLGHSAPIIVVRFNHSMFKRIPSSTHETKQVGWSNGTSKSGEKDLQSYNVIAMGSQDRTITVWT 320 
WD40-rpts      ______)(___________________WD 6__________________)(____________WD 7____________)

Query      321 TGSARPLFVAKHFFGQSVVDLSWSPDGYSLFACSLDGTVAMIHFDPKELGVRLTDTELDELKKSRYGDVRGRQANLVESP 400 
WD40-rpts      (___________________WD 8__________________)         (____________________WD 9___

Query      401 AQLLLETASTKQAGSKRAASDVQQNQVTTKPSVSVESTAKRRKSQVDDRNKAAESTGQTLNKASTLNRVSSPVNQKVYRR 480 
WD40-rpts      _________________)(________________WD10_______________)                         

Query      481 PDGRKRIIPEAVGVPQQENNIMINGESHNFLPASAAAPAKGDSGDFPVEISNRDLSGKEIVCRNPDLKERSRITARATIT 560 
WD40-rpts                                                                                      

Query      561 ESLVIEKVPGTSGRDGVLNVEQSVGIKESSSTDLLIRVFDWKDGEAAPPVCLEACPREHALDTVGAVSTSMVKETEISCK 640 
WD40-rpts           (_______________WD11______________)                                        

Query      641 KSGETLWSDRIMGRVTVLAGNPNFWAAGCEDGSLQVYTKCGRRAMPTMMMGSAATFIDCDDSWKLLLVTRKGSLYVWDLF 720 
WD40-rpts      (________________WD12________________)    (_______________WD13_______________)  

Query      721 NRKCVLHDSLSSLVSSDVNLSSTVKVELLSWYEDSSVIDLDCTIKVISVKLSKSGSPLVVLATRHAFLFDTSLMCWLRVA 800 
WD40-rpts       (_________________WD14________________)                                        

Query      801 DDCFPASNFSSSWNLGSAPCGELAGLQVDVRKYMARKPGWNRITDDGTQTRAHLESQLASSLALESPNEYRQCLLAYVRF 880 
WD40-rpts                                                                                      

Query      881 LAREADESRLREVCESFLGPPTGMAEAASSDTNLSWDPYVLGVKKHKLLRNDILPAMASNRKVQRLLNEFIDLLSEYEDV 960 
WD40-rpts                                                                                      

Query      961 ETADPAPKGSTPTMNCGGVPSSLDQIGSDPPAMTATTPMTIDNDKPVSLENPAALDIGVCEKTGSEDRDKQDQNSRDSGS 1040
WD40-rpts                                                                                      

14 WD40-repeats found in QUERY=AT3G44530.2 (Len=1040):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       7.75  434.79  8.6e-05       20.0%     52.50
  WD 2:  Seg  5    60-94       7.61  429.19  0.00010       25.0%     48.24
  WD 3:  Seg  8   115-153      8.69  473.55  2.6e-05       40.0%     56.60
  WD 4:  Seg 12   157-195      9.41  503.27  1.0e-05       37.5%     57.15
  WD 5:  Seg 17   206-247      3.67  266.30  0.01594       17.5%     39.38
  WD 6:  Seg 20   248-290      5.55  343.82  0.00145       25.0%     42.23
  WD 7:  Seg 24   291-320      3.87  274.58  0.01235       20.0%     30.36
  WD 8:  Seg 26   321-363      7.00  403.74  0.00023       32.5%     58.85
  WD 9:  Seg 31   373-418      3.59  263.08  0.01760       10.0%     35.39
  WD10:  Seg 34   419-455      2.96  236.87  0.03927       17.5%      5.29
  WD11:  Seg 38   566-600      4.10  284.08  0.00921       17.5%     13.51
  WD12:  Seg 43   641-678      4.65  306.54  0.00460       17.5%     40.02
  WD13:  Seg 47   683-718      3.68  266.83  0.01568       17.5%     41.22
  WD14:  Seg 50   722-760      2.90  234.59  0.04209       12.5%     21.30

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     IAE---K------PFWVKHEGLQIFSIDVQPNG-ERFATGGGDH----KVRIWN
   WD 2   60-94     --------------ATLRDHFGSVNCVRWAKNS-RYVASGSDDQ----VIQIHE
   WD 3  115-153    -WK---A------VMTLRGHTADVVDLNWSPDD-SMLASGSLDN----TVHIWN
   WD 4  157-195    -GM---C------TTVLRGHLSLVKGVTWDPIG-SFIASQSDDK----TVIIWR
   WD 5  206-247    DGH---W------AKSLG--STFFRRLGWSPCG-HFLTTTHGFQKPKHSAPVLE
   WD 6  248-290    RGE-WSV------AYDFLGHSAPIIVVRFNHSMFKRIPSSTHET----KQVGWS
   WD 7  291-320    NG-------------------TSKSGEKDLQSY-NVIAMGSQDR----TITVWT
   WD 8  321-363    TGSARPL------FVAKHFFGQSVVDLSWSPDG-YSLFACSLDG----TVAMIH
   WD 9  373-418    LTD---TELDELKKSRYGDVRGRQANLVESPAQ-LLLETASTKQ----AGSKRA
   WD10  419-455    ASD------------VQQNQVTTKPSVSVESTA-KRRKSQVDDR----NKAAES
   WD11  566-600    --------------EKVPGTSGRDGVLNVEQSV-GIKESSSTDL----LIRVFD
   WD12  641-678    --K---S------GETLWSDRIMGRVTVLAGNP-NFWAAGCEDG----SLQVYT
   WD13  683-718    --R---A------MPTMMMGSAAT--FIDCDDS-WKLLLVTRKG----SLYVWD
   WD14  722-760    -RK---C------VLHDSLSSLVSSDVNLSSTV-KVELLSWYED----SSVIDL

   WD40 Template    TGE---C------LRTLSGHTSGVTSVSFSPDG-KRLVSGSEDG----TIKVWD