Input parameters:

  Query = AT3G45620.2 (Len=515)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G45620.2, Len=515):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARPRRRNTEIGDGFTEIFNREIGFSHPITISRRISASEFRIMDLSVPKTKCYGLSVFCRMLRKSEPIQRLISGRVKKLD 80  
WD40-rpts                                         (_________________WD 1_________________)   (_

Query       81 LYGKLNGHEGCVNAVEFNSTGDVLVSGSDDRQIMLWNWLSGSRKLSYPSGHCENVFQTKFIPFTDDRTIITSGADGQVRL 160 
WD40-rpts      ________________WD 2________________)    (__________________WD 3________________

Query      161 GQILENGKVETKRLGRHHGRVYKLAVLPGDPNVFYSCGEDGFVQHFDIRSNSATMVLYSSPFTQGCRRHHSSSRIRLNSI 240 
WD40-rpts      _)(____________________WD 4___________________)                (________________

Query      241 AIDPRNSYYLAVGGSDEYARVYDTRRVQLAPVCRHVLPDAPVNTFCPRHLRETNSVHITGLAYSKAGELLVSYNDELIYL 320 
WD40-rpts      _WD 5_________________)    (_________________________WD 6_______________________

Query      321 FEKNMGYGSSPVSVSPEKLQEMEEPQVYIGHRNAQTVKGVNFFGPNDEYVTSGSDCGHIFIWKKKGGKLVRAMVGDRRVV 400 
WD40-rpts      _)                   (__________________WD 7__________________)   (_____________

Query      401 NQLESHPHIPLLASCGIEKSVKLWTPMSNDVLSLPEKIDKVMELNRVGREDQSRVTLTPDVIMHVLRLQRRQTSAFTERR 480 
WD40-rpts      ____WD 8________________)   (_________________WD 9________________)    (________

Query      481 YVSTDIGSDEGNDARFIASLVANDDESSDRECTVS 515 
WD40-rpts      _________WD10________________)     

10 WD40-repeats found in QUERY=AT3G45620.2 (Len=515):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    36-75       6.85  397.47  0.00027        7.5%     47.33
  WD 2:  Seg  8    79-117      9.68  514.70  7.2e-06       37.5%     54.09
  WD 3:  Seg 12   122-162      7.45  422.36  0.00013       25.0%     48.37
  WD 4:  Seg 16   163-207      6.95  401.56  0.00024       27.5%     55.57
  WD 5:  Seg 21   224-263      7.07  406.87  0.00020       25.0%     46.41
  WD 6:  Seg 24   268-322      5.44  339.44  0.00166       20.0%     42.46
  WD 7:  Seg 27   342-383      6.11  367.10  0.00070       30.0%     49.61
  WD 8:  Seg 31   387-425      8.67  473.00  2.6e-05       22.5%     56.54
  WD 9:  Seg 35   429-467      7.06  406.27  0.00021       10.0%     45.39
  WD10:  Seg 39   472-510      6.46  381.61  0.00045       10.0%     36.87

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   36-75     SAS----EF----------------RIMDLSVPKTKCYG---LSV--FCRMLRKSEPIQRLISGR
   WD 2   79-117    -LD----LY----------------GKLNGHEGCVNAVE---FNS--TGDVLVSGSDDRQIMLWN
   WD 3  122-162    -SR----KL----------------SYPSGHCENVFQTK---FIPFTDDRTIITSGADGQVRLGQ
   WD 4  163-207    ILENGKVET----------------KRLGRHHGRVYKLA---VLP-GDPNVFYSCGEDGFVQHFD
   WD 5  224-263    -QG----CR----------------RHHSSSRIRLNSIA---IDP-RNSYYLAVGGSDEYARVYD
   WD 6  268-322    QLA----PVCRHVLPDAPVNTFCPRHLRETNSVHITGLA---YSK--AGELLVSYN-DELIYLFE
   WD 7  342-383    -ME----EP----------------QVYIGHRNAQTVKGVNFFGP--NDEYVTSGSDCGHIFIWK
   WD 8  387-425    -GK----LV----------------RAMVGDRRVVNQLE---SHP--HIPLLASCGIEKSVKLWT
   WD 9  429-467    -ND----VL----------------SLPEKIDKVMELNR---VGR--EDQSRVTLTPDVIMHVLR
   WD10  472-510    -QT----SA----------------FTERRYVSTDIGSD---EGN--DARFIASLVANDDESSDR

   WD40 Template    TGE----CL----------------RTLSGHTSGVTSVS---FSP--DGKRLVSGSEDGTIKVWD