Input parameters:

  Query = AT3G49180.1 (Len=438)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G49180.1, Len=438):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYWSWTKPQAEVKSYPVEP 80  
WD40-rpts                            (___________________WD 1__________________)(______________

Query       81 IKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQ 160 
WD40-rpts      ____WD 2_________________)   (_________________WD 3________________)            

Query      161 GNTLYEHNFNEHTMSVTDIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKI 240 
WD40-rpts        (__________________WD 4_________________)   (________________WD 5_____________

Query      241 YIGAINATSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKSLRHVRTLIHAKGSRKGPVNNIQIVRK 320 
WD40-rpts      ___)        (_________________WD 6________________)       (_______________WD 7__

Query      321 TIVANSNKTQVSWKSRGALIPPPLEKYERPVEDTMDGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGSAATEMEM 400 
WD40-rpts      _____________)   (_______________WD 8_______________)                           

Query      401 ERLKLEYKRSLQMNEQWQKNYENLLQVVMEEEQIGGTN 438 
WD40-rpts                                            

8 WD40-repeats found in QUERY=AT3G49180.1 (Len=438):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    23-65       6.82  396.46  0.00028       15.0%     54.43
  WD 2:  Seg  7    66-106      8.40  461.83  3.7e-05       20.0%     56.99
  WD 3:  Seg 11   110-148     10.57  551.11  2.3e-06       47.5%     55.50
  WD 4:  Seg 15   163-203      7.30  416.40  0.00015       32.5%     51.70
  WD 5:  Seg 19   207-244      7.58  427.77  0.00011       20.0%     54.94
  WD 6:  Seg 23   253-291      9.78  518.59  6.4e-06       37.5%     52.22
  WD 7:  Seg 27   299-334      4.63  305.99  0.00468        7.5%     38.69
  WD 8:  Seg 30   338-373      5.24  331.05  0.00215       15.0%     25.41

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-65     -GT-EQLQFKPCASPAHGLTAVGEKFLAS--SQLSARNTSGSIFYWS
   WD 2   66-106    WTKPQAEVKSYPVEPIKALAANNE----G--TYLVGGGISGDIYLWE
   WD 3  110-148    -GK-LLKKWHGHYRSVTCLVFSGD----D--SLLVSGSQDGSIRVWS
   WD 4  163-203    -TL-YEHNFNEHTMSVTDIVIDYG----GCNAVIISSSEDRTCKVWS
   WD 5  207-244    -GK-LLKNI-IFPSVINALALDPG----G--CVFYAGARDSKIYIGA
   WD 6  253-291    -TQ-VLGSVSEKGKAITCLAYCAD----G--NLLISGSEDGVVCVWD
   WD 7  299-334    -RT-LIHAKGSRKGPVNNIQIVRK---------TIVANSNKTQVSWK
   WD 8  338-373    -AL-IPPPLEKYER---PVEDTMD----G--IVTVDPPPFSDVPVYS

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSPD----G--KRLVSGSEDGTIKVWD