Input parameters:

  Query = AT3G50590.1 (Len=1614)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G50590.1, Len=1614):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEWATVQHLDLRHVGRGVSKPLQPHTAAFHPSQAVIAVAVGSHIMEFDALTGCKIASIDIGSPAVRMLYSPTSSNAVVAI 80  
WD40-rpts               (_________________WD 1_________________)(__________________WD 2________

Query       81 LEDCTIRSCDFETEQTCVLHSPEKRSEHISSDTEVHLAVTPLQPVVFFGFPKRMSVTVVGTVEGGRAPTKIKTDLKKPIV 160 
WD40-rpts      _________)                                                           (__________

Query      161 NIACHPRLPVLYVAYAEGLIRAYNIHTYAVHYTLQLDNTIKLIGASSFAFHPTLEWIFVGDRRGTLLAWDVSTERPNMIG 240 
WD40-rpts      _____WD 3______________)(____________________WD 4____________________)     (____

Query      241 ITQVGSQPITSISWLPMLRVLVTVSKDGSLQVWKTRVIINPNRPSTQTNFFEPAAMESIDIPKILSQQGGEAVYPLPRIK 320 
WD40-rpts      _____________WD 5________________)             (_______________WD 6_____________

Query      321 TLEVHPKLNLAALIFANMVGNENTQNRAAQTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILAEHQLQALLQEHKG 400 
WD40-rpts      __)           (_______________WD 7_______________)       (_________________WD 8_

Query      401 QSQLTISDIARKAFLYSHFMEGHAKTAPISRLPLITVVDTKDQLKDIPVCQPFHLELNFFNKPNRVLHYPVRSFYIEGLN 480 
WD40-rpts      _______________)(____________WD 9____________)                                  

Query      481 LMAHNLCSGTDNIYKKLYTSIPGNVEYHSKHIVYSRKRHLFLVVFEFSGATNEVVLYWENTGSQLPNSKGSTAKGCDAAF 560 
WD40-rpts                                                                                      

Query      561 IGPNDDQFAILDEDKTGLSMYILPKLTTMEENEKNLLSEENQKKEADPSGIQGPQQFMFETEVDRVFSTPIESTLMFACN 640 
WD40-rpts                                                          (_______________WD10________

Query      641 GTQIGLAKLFQGYRLSASDGHYISTQGEGRKSIKLKKHEIALQSFYSLPFNVVYIWPVLFEIKTIMFRKLTRHVQWQETP 720 
WD40-rpts      _______)                                                                        

Query      721 RGYVAGILTTQRVLMVSLLWVGPALLFSTTTAVCLLGWDGKVRTILSISTPYAALVGALNDRLLLAHPTDISPKQKKGIE 800 
WD40-rpts                                                                                      

Query      801 IKSCLVGLLEPLLIGFSTMQQTFEQKVDLSEILYQITTRFDSLRITPRSLDILARSAPVCGDLAVSLAQAGPQFNQVLRC 880 
WD40-rpts                                                                                      

Query      881 AYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSLLFQRFRQLGYACIKYGQFDSAKETFEVIGDYESMLDLFICHLNPSA 960 
WD40-rpts                                                                                      

Query      961 MRRLAQKLEEESGDPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTDMKSIPKWELAGEVMPY 1040
WD40-rpts                                                                                      

Query     1041 MKNEDGTIPSIVADHIGVYLGCVKGRVNVVEIKEDSLVSKPGGLSLLGKPVSDKPLALPAGESSSMMGLESLGKQNVADE 1120
WD40-rpts                                                                                      

Query     1121 QAKAAEEFKKTMYGATGDGSSSDEEGVTKPKKLQIRIREKPTSTTVDVNKLKEAAKTFKLGDGLGLTMSRTKSINAGSQD 1200
WD40-rpts                                                                                      

Query     1201 LGQMLSQPSSSTVATTTAPSSASAPVDPFAMSSWTQQPQPVSQPAPPGVAAPIPEDFFQNTIPSVEVAKTLPPPGTYLSK 1280
WD40-rpts                                                                                      

Query     1281 MDQAARAAIAAQGGPNQANNTPLPDIGLPDGGVPQQYPQQTSQQPGAPFQTVGLPDGGVRQQYPGQNQVPSQVPVSTQPL 1360
WD40-rpts                                                                                      

Query     1361 DLSVLGVPNTGDSGKPPGQPQSPPASVRPGQVPRGAAAPVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDQSRGADIKA 1440
WD40-rpts                                                                                      

Query     1441 QATICAQYKIAVTLLREILRLQRVQGASALSAKDEMARLSRHLASLPLLAKHRINCIRTAIKRNMEVQNYGYSKQMLELL 1520
WD40-rpts                                                                                      

Query     1521 LSKAPASKQEELRGLVDLCVQRGTSNKSIDPLEDPSQLCSATLSRLSTIGYDVCDLCGAKFAALSSPGCIICGMGSIKRS 1600
WD40-rpts                                                                                      

Query     1601 DALAGPAPVSTPFG 1614
WD40-rpts                    

10 WD40-repeats found in QUERY=AT3G50590.1 (Len=1614):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-49       5.31  333.92  0.00197        5.0%     34.67
  WD 2:  Seg  5    50-90       6.07  365.57  0.00074       25.0%     49.25
  WD 3:  Seg 14   150-184      7.18  411.43  0.00018       10.0%     48.74
  WD 4:  Seg 17   185-230      7.47  423.21  0.00012       22.5%     47.15
  WD 5:  Seg 21   236-274      8.78  477.36  2.3e-05       27.5%     52.10
  WD 6:  Seg 25   288-323      3.48  258.33  0.02037        7.5%     29.00
  WD 7:  Seg 29   335-370      3.35  253.11  0.02390        5.0%     26.52
  WD 8:  Seg 31   378-416      6.55  385.34  0.00040        5.0%     28.00
  WD 9:  Seg 34   417-446      3.51  259.45  0.01968       12.5%     14.06
  WD10:  Seg 42   613-648      4.83  314.36  0.00361       15.0%     32.98

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-49     DL------RHVGRGVSKPLQPHTAAFHPSQAV-IAVAVGSHIMEFDA
   WD 2   50-90     LT------GCKIASIDIGSPAVRMLYSPTSSNAVVAILEDCTIRSCD
   WD 3  150-184    -----------KIKTDLKKPIVNIACHPRLPV-LYVAYAEGLIRAYN
   WD 4  185-230    IHTYAVHYTLQLDNTIKLIGASSFAFHPTLEW-IFVGDRRGTLLAWD
   WD 5  236-274    -P------NMIGITQVGSQPITSISWLPMLRV-LVTVSKDGSLQVWK
   WD 6  288-323    -T------NFFEPAAMESIDIPKILSQQGGEA-VYPLP---RIKTLE
   WD 7  335-370    ----------FANMVGNENTQNRAAQTREGRK-QLFAVLQSARGSSA
   WD 8  378-416    -S------SMGSSGILAEHQLQALLQEHKGQS-QLTISDIARKAFLY
   WD 9  417-446    ----------SHFMEGHAK------TAPISRL-PLITVVDTKDQLKD
   WD10  613-648    -G------PQQFMFETEVDRVFS---TPIEST-LMFACNGTQIGLAK

   WD40 Template    TG------ECLRTLSGHTSGVTSVSFSPDGKR-LVSGSEDGTIKVWD