Input parameters:

  Query = AT3G51930.1 (Len=415)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G51930.1, Len=415):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVRSIQEGVLMSSSSSSTTSNSNDSDGSLSPSASTKSFVLNTLRPPITGAYKPLAVLSAHVGSVSSLALCGEFLLSASQG 80  
WD40-rpts         (___________________WD 1___________________)   (________________WD 2_________

Query       81 KDIIVWQQPDLKIFAKFGQGDGSVKALVSVGSKVFTAHQDSRIRVWKVSRRNSENAFRLVDTLPTTKDYLGKFMKQSNYV 160 
WD40-rpts      ______)   (________________WD 3_______________)                                 

Query      161 QTRRNHKRLWIEHADSISCLAVHAGIIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAGDGRVYSASADGKVKIWG 240 
WD40-rpts         (________________WD 4_______________)   (________________WD 5_______________)

Query      241 KEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVSGDGNWVYGGGSDGFVIGWEKKEKEGDFEEWRLGFETRGHNMA 320 
WD40-rpts                (_____________________WD 6____________________)          (____________

Query      321 VLCMCVVGEMVCSGSADKSIGLWRREVTGMLCKFGVIHGHEGPVKCLQASPNNVGAGFMLYSGGLDKSLRVWWVPKQDNL 400 
WD40-rpts      ____WD 7_______________)(______________________WD 8_____________________)       

Query      401 EEKKSSFKTLLTQKE 415 
WD40-rpts                     

8 WD40-repeats found in QUERY=AT3G51930.1 (Len=415):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-47       7.24  413.73  0.00017       25.0%     28.89
  WD 2:  Seg  4    51-87       7.02  404.72  0.00022       32.5%     54.40
  WD 3:  Seg  8    91-127      6.60  387.35  0.00037       15.0%     48.81
  WD 4:  Seg 14   164-200      6.70  391.27  0.00033       25.0%     44.09
  WD 5:  Seg 18   204-240      6.89  399.47  0.00026       30.0%     52.73
  WD 6:  Seg 23   251-297      7.05  405.71  0.00021       25.0%     43.67
  WD 7:  Seg 27   308-344      6.41  379.59  0.00048       25.0%     45.23
  WD 8:  Seg 31   345-393      7.23  413.47  0.00017       30.0%     48.82

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-47     SIQE-----GVLMSS-------SSSSTTSNSNDSD----GSLSPSASTKSFVLNTLRPPI
   WD 2   51-87     -YKP-----LAVLSA-------HVGSVSSLALC------GEFLLSASQG----KDIIVWQ
   WD 3   91-127    -LKI-----FAKFGQ-------GDGSVKA--LVSV----GSKVFTAHQD----SRIRVWK
   WD 4  164-200    -RNH-----KRLWIE-------HADSISCL--AVH----AGIIYSGSWD----KTLKVWR
   WD 5  204-240    -LKC-----LESIKA-------HDDAINGL-VAGD----G-RVYSASAD----GKVKIWG
   WD 6  251-297    SSSS-----SSLHVLKATLEGRAEVSVNSVVVSGD----GNWVYGGGSD----GFVIGWE
   WD 7  308-344    -WRL-----GFETRG-------HNMAV--LCMCVV----GEMVCSGSAD----KSIGLWR
   WD 8  345-393    REVTGMLCKFGVIHG-------HEGPVKCLQASPNNVGAGFMLYSGGLD----KSLRVWW

   WD40 Template    TGEC-----LRTLSG-------HTSGVTSVSFSPD----GKRLVSGSED----GTIKVWD