Input parameters:

  Query = AT3G52030.1 (Len=454)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G52030.1, Len=454):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRTETGDESSARKMRRKVPTSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKRLKLLQASCRKMHHLGSDSPSS 80  
WD40-rpts                                                                                      

Query       81 STSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSHRVSQCRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDAS 160 
WD40-rpts                              (_________________WD 1_________________)                

Query      161 SLIDFDFDESKKLEVVSLAWEYFDSVVVVVVEIVGLVGTRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDG 240 
WD40-rpts           (_________________WD 2_________________)   (________________WD 3___________

Query      241 TARVFDMYSKTCSQIIRTQGGPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKSTITAGGIQTICFNQGTNLAFI 320 
WD40-rpts      _____)   (________________WD 4________________)   (__________________WD 5_______

Query      321 GTTGGYVSCWDLRKMDRLWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGVLRMIDQKSGRVLSRVIMDDKFSTTSTRNNQV 400 
WD40-rpts      __________)   (_________________WD 6_________________)(_________________WD 7____

Query      401 VIEKRRGKRVSQDMEIDKIERKVRPQISCIAMGMKKMVTAHNGKCISVWKFNLS 454 
WD40-rpts      _____________)________________WD 8_______________)    

8 WD40-repeats found in QUERY=AT3G52030.1 (Len=454):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   105-144      5.94  360.19  0.00087       15.0%     53.35
  WD 2:  Seg  7   166-205      4.83  314.19  0.00363       10.0%     32.91
  WD 3:  Seg 10   209-246      6.59  386.85  0.00038       22.5%     51.48
  WD 4:  Seg 14   250-287      7.36  418.89  0.00014       25.0%     51.48
  WD 5:  Seg 18   291-331      7.73  433.77  8.9e-05       20.0%     54.55
  WD 6:  Seg 22   335-374      7.28  415.30  0.00016       22.5%     55.04
  WD 7:  Seg 26   375-414      2.98  237.69  0.03830        2.5%     29.91
  WD 8:  Seg 29   414-450      4.66  307.26  0.00449       15.0%     43.32

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  105-144    LRGRIEIERWEAHSH--RVSQCRMK---KGLLLTGVGDKVMRLWS
   WD 2  166-205    DFD--ESKKLEVVSL--AWEYFDSVV-VVVVEIVGLVGTRISIWR
   WD 3  209-246    -QR--SIFPSRAGTF--PK-GLCMRY-IDPEAVVGCEDGTARVFD
   WD 4  250-287    -KT--CSQIIRTQGG--PITCLSLSD-NQ-LFLSGSSLGRVTVSD
   WD 5  291-331    -DQ--PVATLKSTITAGGIQTICFNQ-GTNLAFIGTTGGYVSCWD
   WD 6  335-374    -MD--RLWEKRVSPN--VVYSIQQLRNDTSVMVAGGIDGVLRMID
   WD 7  375-414    QKS--GRVLSRVIMD--DKFSTTSTR-NNQVVIEKRRGKRVSQDM
   WD 8  414-450    -ME--IDKIERKVRP--QISCI--AM-GMKKMVTAHNGKCISVWK

   WD40 Template    TGE--CLRTLSGHTS--GVTSVSFSP-DGKRLVSGSEDGTIKVWD