Input parameters:

  Query = AT3G52030.2 (Len=433)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G52030.2, Len=433):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRTETGDESSARKMRRKVPTSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKRLKLLQASCRKMHHLGSDSPSS 80  
WD40-rpts                                                                                      

Query       81 STSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSHRVSQCRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDAS 160 
WD40-rpts                                 (________________WD 1_______________)   (____________

Query      161 SLIDFDFDESKIVGLVGTRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDGTARVFDMYSKTCSQIIRTQGG 240 
WD40-rpts      ____WD 2_______________)   (________________WD 3________________)   (___________

Query      241 PITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKSTITAGGIQTICFNQGTNLAFIGTTGGYVSCWDLRKMDRLWEK 320 
WD40-rpts      _____WD 4________________)   (__________________WD 5_________________)   (______

Query      321 RVSPNVVYSIQQLRNDTSVMVAGGIDGVLRMIDQKSGRVLSRVIMDDKFSTTSTRNNQVVIEKRRGKRVSQDMEIDKIER 400 
WD40-rpts      ___________WD 6_________________)   (________________WD 7_______________)(______

Query      401 KVRPQISCIAMGMKKMVTAHNGKCISVWKFNLS 433 
WD40-rpts      _________WD 8_______________)    

8 WD40-repeats found in QUERY=AT3G52030.2 (Len=433):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   108-144      6.17  369.72  0.00065       15.0%     54.44
  WD 2:  Seg  6   148-184      4.93  318.24  0.00320       12.5%     47.08
  WD 3:  Seg 10   188-225      7.06  406.20  0.00021       22.5%     46.53
  WD 4:  Seg 14   229-266      7.73  434.00  8.8e-05       27.5%     53.94
  WD 5:  Seg 18   270-310      7.94  442.45  6.8e-05       20.0%     56.97
  WD 6:  Seg 22   314-353      7.49  424.26  0.00012       22.5%     57.34
  WD 7:  Seg 26   357-393      3.71  267.83  0.01521        7.5%     45.11
  WD 8:  Seg 30   394-429      4.76  311.10  0.00399       15.0%     48.65

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  108-144    RIEIERWEAHSH--RVSQCR-M--KKGLLLTGVGDKVMRLWS
   WD 2  148-184    YKCMEEYSLPDA--SS--LI-DFDFDESKIVGLVGTRISIWR
   WD 3  188-225    QRSIFPSRAGTF---PKGLC-MRYIDPEAVVGCEDGTARVFD
   WD 4  229-266    KTCSQIIRTQGG--PITCLS-LS-DNQLFLSGSSLGRVTVSD
   WD 5  270-310    DQPVATLKSTITAGGIQTIC-FNQGTNLAFIGTTGGYVSCWD
   WD 6  314-353    MDRLWEKRVSPN--VVYSIQQLRNDTSVMVAGGIDGVLRMID
   WD 7  357-393    GRVLSRVIMDDK--FSTTST-RNNQV--VIEKRRGKRVSQDM
   WD 8  394-429    -EIDKIERKVRP--QISCIA-MGM--KKMVTAHNGKCISVWK

   WD40 Template    GECLRTLSGHTS--GVTSVS-FSPDGKRLVSGSEDGTIKVWD