Input parameters:

  Query = AT3G52190.1 (Len=398)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G52190.1, Len=398):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIEEASRESGHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLKDSDGDPVAVS 80  
WD40-rpts            (_____________________WD 1____________________)         (_________________

Query       81 VHPGGDYFVCSTSKGGCKLFELVGGATGITILAKELLPLQNAGLQKCMAFSFDGSKLAVGGVDGCLRIMEWPNLSVILDE 160 
WD40-rpts      WD 2________________)          (_________________WD 3________________)   (______

Query      161 PKAHKSIRDMDFSLDSEFLATTSTDGSARIWKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYD 240 
WD40-rpts      ___________WD 4________________)   (____________________WD 5___________________)

Query      241 ISTWKKLGFKKLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSERVMLTTSSEW 320 
WD40-rpts         (_________________WD 6________________)(___________________WD 7______________

Query      321 GEMVTKLTVPKEWKEWQIYALLFCLFMASVIAAYVFFENSDSFWKLPMGKDQKRPKISLFGGSSSTPSEDHSRWNLDL 398 
WD40-rpts      _____)_________________WD 8_________________)                                 

8 WD40-repeats found in QUERY=AT3G52190.1 (Len=398):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     7-53       6.78  394.64  0.00030       17.5%     49.67
  WD 2:  Seg  6    63-101      8.16  451.76  5.1e-05       22.5%     49.80
  WD 3:  Seg 11   112-150      8.52  466.41  3.2e-05       22.5%     47.03
  WD 4:  Seg 14   154-192      9.02  487.13  1.7e-05       20.0%     50.86
  WD 5:  Seg 18   196-240      6.31  375.40  0.00054       25.0%     48.52
  WD 6:  Seg 22   244-282      8.93  483.41  1.9e-05       22.5%     58.76
  WD 7:  Seg 26   283-326      6.78  394.85  0.00030       12.5%     56.07
  WD 8:  Seg 29   325-365      4.66  307.10  0.00452        5.0%     26.15

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-53     SRESGHVVCGS----WIRRP-KKVNWVLIAKASKRRGS-----SVSSPALLNIFSFD
   WD 2   63-101    -PL-------A----THTLK-DSDGDPVAVSVHPGGDY-----FVCSTSKGGCKLFE
   WD 3  112-150    LAK-------E----L-LPL-QNAGLQKCMAFSFDGSK-----LAVGGVDGCLRIME
   WD 4  154-192    -LS-------V----ILDEP-KAHKSIRDMDFSLDSEF-----LATTSTDGSARIWK
   WD 5  196-240    -GF-------P----LSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYD
   WD 6  244-282    -WK-------K----LGFKK-LSRKTASTMAVSLDGKY-----IALGGKDGDVSVAE
   WD 7  283-326    VKT-------MEIYHYSKRL-HLGQSIASLEFCPSERV-----MLTTSSEWGEMVTK
   WD 8  325-365    -TK-------L----TVPKE-WKEWQIYALLFCLFMAS---VIAAYVFFENSDSFWK

   WD40 Template    TGE-------C----LRTLS-GHTSGVTSVSFSPDGKR-----LVSGSEDGTIKVWD