Input parameters:

  Query = AT3G53390.1 (Len=558)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G53390.1, Len=558):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMNTSNGMISAPSSSSSPAANPQSPGIKTYFKTPEGKYKLHYEKTHSSGLLHYAHGKTVTQVTIAQLKERAAPSTPTGTS 80  
WD40-rpts                  (_________________WD 1_________________)       (_________________WD 

Query       81 SGYSASSGFRSATARLLGTGNGSRALSFVGGNGGGKSVSTSSRISGSFAASNSNTSMTNTNFDGKGTYLVFNVSDAIFIC 160 
WD40-rpts      2________________)   (_________________WD 3________________)                    

Query      161 DLNSQEKDPVKSIHFSNSNPMCHAFDPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVSKKLVGALHYNKDGSVNNSRCTSI 240 
WD40-rpts            (__________________WD 4__________________)                                

Query      241 SWVPGGDGAFVVAHADGNLYVYEKNKDGATESTFPAIRDPTQFSVDKAKYSKSNPVARWHICQGSINSIAFSNDGAHLAT 320 
WD40-rpts           (_________________WD 5________________)        (_________________WD 6______

Query      321 VGRDGYLRIFDFLTQKLVCGGKSYYGALLCCSWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSNWS 400 
WD40-rpts      __________)   (_________________WD 7________________)   (_______________________

Query      401 SPNSDGSGEHVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRAPGGSPTYSTGSSAHWDNVIPMGTLQPAPCKRDVPKLSPI 480 
WD40-rpts      WD 8_______________________)   (______________WD 9_____________)            (___

Query      481 IAHRVHTEPLSGLMFTQESVVTACREGHIKIWTRPSESETQTNSSEANPTTALLSTSFTKDNKASLSSKIISGSTFKQ 558 
WD40-rpts      _____________WD10_______________)                                             

10 WD40-repeats found in QUERY=AT3G53390.1 (Len=558):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-52       5.02  321.96  0.00285       10.0%     13.50
  WD 2:  Seg  3    60-98       5.70  350.27  0.00118       10.0%     20.59
  WD 3:  Seg  5   102-140      7.36  418.70  0.00014       22.5%     49.82
  WD 4:  Seg 11   167-208      4.65  306.94  0.00454       20.0%     48.59
  WD 5:  Seg 17   246-284      4.41  296.74  0.00622        7.5%     39.35
  WD 6:  Seg 21   293-331      8.52  466.63  3.2e-05       22.5%     55.62
  WD 7:  Seg 25   335-373      9.21  495.27  1.3e-05       25.0%     57.41
  WD 8:  Seg 29   377-428      7.15  409.95  0.00019       27.5%     56.43
  WD 9:  Seg 33   432-464      4.27  291.05  0.00742       17.5%     21.10
  WD10:  Seg 36   477-513      6.38  378.39  0.00049       20.0%     49.46

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-52     SSSSSPAANPQSPGIKTYFKTP---EGK-------------YKLHYEKTHSSGLLH
   WD 2   60-98     -TQVTIAQLKERAAPSTPTGTS---SGY-------------SASSGFRSATARLLG
   WD 3  102-140    -GSRALSFVGGNGGGKSVSTSS---RIS-------------GSFAASNSNTSMTNT
   WD 4  167-208    -KDPVKSIHFSNSNPMCHAFDPDAKDGH-------------DLLIGLNSGDVYTVS
   WD 5  246-284    -GDGAFVVAHADGNLYVYEKNK---DGA-------------TESTFPAIRDPTQFS
   WD 6  293-331    -SNPVARWHICQGSINSIAFSN---DGA-------------HLATVGRDGYLRIFD
   WD 7  335-373    -QKLVCGGKSYYGALLCCSWSM---DGK-------------YILTGGEDDLVQVWS
   WD 8  377-428    -RKVVAWGEGHNSWVSGVAFDS---NWSSPNSDGSGEHVMYRFGSVGQDTQLLLWD
   WD 9  432-464    -DEIVVPLRRAPG------GSP---TYS-------------TGSSAHWDNVIPMGT
   WD10  477-513    -LSPIIAHRVHTEPLSGLMFTQ---ES---------------VVTACREGHIKIWT

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP---DGK-------------RLVSGSEDGTIKVWD