Input parameters:

  Query = AT3G54190.1 (Len=467)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G54190.1, Len=467):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEGRRITASPRPCSGRRIVAKKRSRPDGFVNSVKKLQRREISSRKDRAFSISTAQERFRNMRLVEQYDTHDPKGHCLVAL 80  
WD40-rpts                                                                                      

Query       81 PFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 160 
WD40-rpts                                                                                      

Query      161 TRIEYILRGQPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLI 240 
WD40-rpts                   (_________________WD 1________________)   (_________________WD 2___

Query      241 FKRAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRAEFMTPSAFIFL 320 
WD40-rpts      _____________)  (__________________WD 3_________________)         (_____________

Query      321 YENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGK 400 
WD40-rpts      WD 4_____________) (____________________WD 5___________________)              (_

Query      401 CLAKITPSSGPPKDDESSSSNCMGKNSKQRRNAVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 467 
WD40-rpts      ______________________________WD 6_______________________________) 

6 WD40-repeats found in QUERY=AT3G54190.1 (Len=467):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   174-212      4.18  287.15  0.00838       22.5%     36.23
  WD 2:  Seg 11   216-254      3.72  268.47  0.01491       17.5%     45.89
  WD 3:  Seg 15   257-297      5.70  350.29  0.00118       17.5%     29.56
  WD 4:  Seg 19   307-338      4.40  296.49  0.00627        7.5%     33.93
  WD 5:  Seg 23   340-384      5.77  353.04  0.00109       17.5%     28.33
  WD 6:  Seg 26   399-466      5.02  322.14  0.00283       20.0%     28.44

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  174-212    -GFALFESESL------------------K-----------WPGFVEF----DDVNGKVLTYSAQDSV--YKVFD
   WD 2  216-254    -YTMLYSISDK------------------N-------------VQEIK----ISPGIMLLIFKRAASHVPLKILS
   WD 3  257-297    DGTVLKSFNHL------------------L-----------HRNKKVDFIEQF---NEKLLVKQENEN--LQILD
   WD 4  307-338    -------SRAE------------------F-----------MTPSAFI----FLYENQLFLTFR-NRN--VSVWN
   WD 5  340-384    RGELVTSFEDH------------------L------LWHPDCNTNNIY----ITSDQDLIISYCKADT--EDQWI
   WD 6  399-466    -GKCLAKITPSSGPPKDDESSSSNCMGKNSKQRRNAVAEALEDITALF----YDEERNEIYTGNRHGL--VHVWS

   WD40 Template    TGECLRTLSGH------------------T-----------SGVTSVS----FSPDGKRLVSGSEDGT--IKVWD