Input parameters:

  Query = AT3G56990.1 (Len=711)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G56990.1, Len=711):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTSYGDRLKSTSINGVKLYNVSSAPNVPTWLNPKKQRALRKNPHYMQRVELIQELKFETATTRIKATPDGEYLIASGIYP 80  
WD40-rpts                                              (_____________________WD 1______________

Query       81 PQVKVYELNQLALKFERHLDSEIVDFEILDDDFSKLAFLCADRSINLHAKYGKHHTLRIPRMGRDMTYDSWSCDLLCAAS 160 
WD40-rpts      ______)(__________________WD 2__________________)                               

Query      161 SPDLYRINLEQGRFLSPLSTQSPALNVVSRSNLHGLVACGGEDGAVEFFDMRMKSSAARINAVTHGGDAAAEVTAIEFDD 240 
WD40-rpts                 (_________________WD 3________________)            (________________W

Query      241 SEGLQVAVGSSAGKVFIYDLRTSTPIRVKDHMYESPILNIKWQRTLNTQQPKLITTDKHIVRIWDPNTGEGMTSIEPTQG 320 
WD40-rpts      D 4_______________)                                                 (___________

Query      321 GINDICVFRGSGLMLLALDSSLIPSYFIPELGPAPKWCSPLENLTEELEESAQTTIYDNYKFLAMEDLEKLQLTHLIGTD 400 
WD40-rpts      ______WD 5________________)                                                     

Query      401 LLKASMHGYFINYHLYKKALAVIEPFAFDDYLERRKQEKLEEQRTQRITKKRRLPKVNRDLAARLHGDESEEENKTAEDG 480 
WD40-rpts                                                                                      

Query      481 EATKKVLKKKKPILTDEHFVDGRFGSMFQNPDFQIDKDSYEYGVLHPVASSKKQPSLLDEHFEAVSDDDENSDSDASQPS 560 
WD40-rpts                                                                                      

Query      561 DDEADDGDATRPSKKARTPKLYEVKDERHAAAYHNRTSLAKEDSLPMGERVKAIENRRGNFGGSKDIKFGPGGSREFSFK 640 
WD40-rpts                                                                                      

Query      641 ARGSSKYKEDRDDEYEDGQRNKRRGVQSLGLKSTNIRGGFRGRGGGGFRGRGGGGSRGKGGRGGGRGRGRQ 711 
WD40-rpts                                                                             

5 WD40-repeats found in QUERY=AT3G56990.1 (Len=711):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    41-87       3.76  269.78  0.01432       25.0%     52.86
  WD 2:  Seg  7    88-129      4.06  282.49  0.00967       15.0%     50.50
  WD 3:  Seg 15   172-210      7.06  406.17  0.00021       30.0%     54.38
  WD 4:  Seg 20   223-259      4.63  306.09  0.00466       20.0%     44.36
  WD 5:  Seg 27   309-347      4.50  300.52  0.00554       10.0%     49.94

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   41-87     KNPHYMQRVELIQELKFETA--TTRIKATP-DGEYLIASGIYPPQVKVYE
   WD 2   88-129    LNQ------LALKFERHLDSEIVDFEILDD-DFSKL-AFLCADRSINLHA
   WD 3  172-210    -GR------FLSPLSTQSPA--LNVVSRSN-LHGLV-ACGGEDGAVEFFD
   WD 4  223-259    ----------VTHGGDAAAE--VTAIEFDDSEGLQV-AVGSSAGKVFIYD
   WD 5  309-347    -GE------GMTSIEPTQGG--INDICVFR-GSGLM-LLALDSSLIPSYF

   WD40 Template    TGE------CLRTLSGHTSG--VTSVSFSP-DGKRL-VSGSEDGTIKVWD