Input parameters:

  Query = AT3G62770.1 (Len=425)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G62770.1, Len=425):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATVSSSSWPNPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSDEPNQTSNQSPLSPPTPNLPVMPPPSVLH 80  
WD40-rpts                          (_________________WD 1_________________)                    

Query       81 LSFNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIG 160 
WD40-rpts                                (____________________WD 2____________________)   (____

Query      161 ELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKR 240 
WD40-rpts      ___________WD 3______________)   (__________________WD 4__________________)  (__

Query      241 TKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTLRQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 320 
WD40-rpts      _______________WD 5_________________)   (__________________WD 6_________________

Query      321 GLKVNSGSQVKDSSRIAPDATPSSPSSSLSLFKGVLPRYFSSEWSVAQFRLVEGTQYIAAFGHQKNTVVILGMDGSFYRC 400 
WD40-rpts      )   (__________________WD 7_________________)      (____________WD 8____________

Query      401 QFDPVNGGEMSQLEYHNCLKPPSVF 425 
WD40-rpts      )                        

8 WD40-repeats found in QUERY=AT3G62770.1 (Len=425):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    21-60       5.15  327.45  0.00240       10.0%     -17.89
  WD 2:  Seg  4   107-152      3.92  276.39  0.01168       20.0%     41.91
  WD 3:  Seg  8   156-190      3.81  272.11  0.01332       30.0%     42.50
  WD 4:  Seg 12   194-235      4.15  286.25  0.00861       17.5%     47.41
  WD 5:  Seg 16   238-277      7.30  416.34  0.00015       20.0%     54.46
  WD 6:  Seg 20   281-321      7.03  405.11  0.00022       22.5%     55.94
  WD 7:  Seg 24   325-365      4.38  295.76  0.00642        7.5%     13.24
  WD 8:  Seg 25   372-401      3.79  271.11  0.01374       10.0%     45.43

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-60     ASDSDSTFPSHR--D--RVDEPDSLDSFSSMS-------L-NS--DEPN-QTSNQ
   WD 2  107-152    -REIFRRDFDRG--G--GVAVVEMLFRCNILALVGGGPDP-QY--PPNK-VMIWD
   WD 3  156-190    -GRCIGELSFR---S--DVRSVRLRRDRIIVV-------L------EQK-IFVYN
   WD 4  194-235    -LKLMHQIETIA--NPKGLCAVSQGVGSMVLV-------CPGL--QKGQ-VRIEH
   WD 5  238-277    -SKRTKFVMAHD--S--RIACFALTQDGHLLA-------T-AS--SKGTLVRIFN
   WD 6  281-321    -GTLRQEVRRGADRA--EIYSLAFSSNAQWLA-------V-SS--DKGT-VHVFG
   WD 7  325-365    -NSGSQVKDSSR--I--APDATPSSPSSSLSL-------F-KGVLPRYF-SSEWS
   WD 8  372-401    ----------VE--G--TQYIAAFGHQKNTVV-------I-LG--MDGS-FYRCQ

   WD40 Template    TGECLRTLSGHT--S--GVTSVSFSPDGKRLV-------S-GS--EDGT-IKVWD