Input parameters:

  Query = AT3G62770.3 (Len=396)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G62770.3, Len=396):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATVSSSSWPNPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSDEPNQTSNQSPLSPPTPNLPVMPPPSVLH 80  
WD40-rpts                                                                                      

Query       81 LSFNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIG 160 
WD40-rpts                                (____________________WD 1____________________)   (____

Query      161 ELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKR 240 
WD40-rpts      ___________WD 2______________)   (__________________WD 3__________________)  (__

Query      241 TKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTLRQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 320 
WD40-rpts      _______________WD 4_________________)   (__________________WD 5_________________

Query      321 GLKVNSGSQVKDSSRIAPDATPSSPSSSLSLFKGVLPRYFSSEWSVAQFRLVEGTQYIAAFGHQKNTVVILGMDGR 396 
WD40-rpts      )   (__________________WD 6_________________)                               

6 WD40-repeats found in QUERY=AT3G62770.3 (Len=396):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   107-152      4.83  314.25  0.00362       20.0%     42.11
  WD 2:  Seg  8   156-190      4.30  292.18  0.00717       30.0%     43.15
  WD 3:  Seg 12   194-235      4.83  314.18  0.00363       17.5%     50.37
  WD 4:  Seg 16   238-277      7.63  429.96  1.0e-04       20.0%     54.07
  WD 5:  Seg 20   281-321      7.35  418.41  0.00014       22.5%     56.82
  WD 6:  Seg 23   325-365      4.29  292.03  0.00720        7.5%     25.54

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  107-152    REIFRRDFDRG--G--GVAVVEMLFRCNILALVGGGPDP-QYPPNK-V--MIWD
   WD 2  156-190    GRCIGELSFR---S--DVRSVRLRRDRIIVV-------L----EQK-I--FVYN
   WD 3  194-235    LKLMHQIETIA--NPKGLCAVSQGVGSMVLV-------CPGLQKGQ-V--RIEH
   WD 4  238-277    SKRTKFVMAHD--S--RIACFALTQDGHLLA-------T-ASSKGTLV--RIFN
   WD 5  281-321    GTLRQEVRRGADRA--EIYSLAFSSNAQWLA-------V-SSDKGT-V--HVFG
   WD 6  325-365    NSGSQVKDSSR--I--APDATPSSPSSSLSL-------F-KGVLPR-YFSSEWS

   WD40 Template    GECLRTLSGHT--S--GVTSVSFSPDGKRLV-------S-GSEDGT-I--KVWD