Input parameters:

  Query = AT3G63460.3 (Len=1094)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G63460.3, Len=1094):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MACIKGVGRSASVALAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSDDRDLPLVGEIPSSERFNRLAWGRNGSGSE 80  
WD40-rpts      (_______________WD 1______________)                         (_________________WD

Query       81 EFALGLIAGGLVDGNIDLWNPLSLIGSQPSENALVGHLSVHKGPVRGLEFNAISSNLLASGADDGEICIWDLLKPSEPSH 160 
WD40-rpts       2_________________)           (_________________WD 3_________________)(________

Query      161 FPLLKGSGSATQGEISFISWNRKVQQILASTSYNGTTVIWDLRKQKPIINFADSVRRRCSVLQWNPNVTTQIMVASDDDS 240 
WD40-rpts      ______________WD 4______________________)(_____________________WD 5_____________

Query      241 SPTLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELPAGNNWNFDVHWYPKIPG 320 
WD40-rpts      _______)    (_________________WD 6_________________)   (_________________WD 7___

Query      321 VISASSFDGKIGIYNIEGCSRYGVEENNFGTAPLKAPKWYKRPVGASFGFGGKLVSCHARAPAKGTSSILSESLVSRTSE 400 
WD40-rpts      ______________)           (__________________WD 8__________________)            

Query      401 FEAAIENGDMTSLRGLCEKKSEETESEEEKETWGLLKIMFEEEGTSRTKLISHLGFTLPVAEKDQAVDGLSSDLNGIRLE 480 
WD40-rpts                                                                                      

Query      481 DTAADALDLDDSNEAAAFAMDNGEDFFNNFPAKPDTPVSTSAKDFMPSDTDFSTKGEETQEMQEEEEESSDPVFDNAIQR 560 
WD40-rpts                                                                                      

Query      561 ALIVGDYKEAVDQCITANKMADALVIAHVGGTALWESTREKYLKTSSAPYMKVVSAMVNNDLRSLIYTRSHKFWKETLAL 640 
WD40-rpts                                                                                      

Query      641 LCTFAQGEQWTTLCDALASKLMAAGNTLAAVLCYICAGNVDRTVEIWSRSLANERDGRSYAELLQDLMEKTLVLALATGN 720 
WD40-rpts                                                                                      

Query      721 KKFSASLCKLFESYAEILASQGLLTTAMKYLKVLDSGGLSPELSILRDRISLSAEPETNTTASGNTQPQSTMPYNQEPTQ 800 
WD40-rpts                                                                                      

Query      801 AQPNVLANPYDNQYQQPYTDSYYVPQVSHPPMQQPTMFMPHQAQPAPQPSFTPAPTSNAQPSMRTTFVPSTPPALKNADQ 880 
WD40-rpts                                                                                      

Query      881 YQQPTMSSHSFTGPSNNAYPVPPGPGQYAPSGPSQLGQYPNPKMPQVVAPAAGPIGFTPMATPGVAPRSVQPASPPTQQA 960 
WD40-rpts                                                                                      

Query      961 AAQAAPAPATPPPTVQTADTSNVPAHQKPVIATLTRLFNETSEALGGARANTTKKREIEDNSRKLGALFVKLNSGDISKN 1040
WD40-rpts                                                                                      

Query     1041 AADKLAQLCQALDNNDFSTALQIQVLLTTSEWDECNFWLATLKRMMVKARQNVR 1094
WD40-rpts                                                            

8 WD40-repeats found in QUERY=AT3G63460.3 (Len=1094):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-35       3.26  249.23  0.02693       15.0%     38.86
  WD 2:  Seg  6    61-100      3.83  272.88  0.01301       20.0%     14.61
  WD 3:  Seg  9   112-151      6.41  379.48  0.00048       32.5%     50.11
  WD 4:  Seg 13   152-201      4.37  295.27  0.00652       22.5%     42.99
  WD 5:  Seg 16   202-248      3.39  254.61  0.02283       17.5%     51.28
  WD 6:  Seg 20   253-292      6.79  395.01  0.00030       27.5%     50.78
  WD 7:  Seg 24   296-335      5.31  334.09  0.00196       20.0%     51.73
  WD 8:  Seg 29   347-388      2.90  234.65  0.04201       12.5%     12.55

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-35     MAC---------IKGV-------GRSASVALAP-D-AP-Y-MAAGTMAG---AVDLSF
   WD 2   61-100    IPS---------SERFNRLAW--GRNGSGSEEF-A-LG-L-IAGGLVDG---NIDLWN
   WD 3  112-151    -NA---------LVGHLSVHK--GPVRGLEFNAIS-SN-L-LASGADDG---EICIWD
   WD 4  152-201    LLKPSEPSHFPLLKGSGSATQ--GEISFISWNR-K-VQ-QILASTSYNG---TTVIWD
   WD 5  202-248    LRK------QKPIINFADSVR--RRCSVLQWNP-N-VTTQ-IMVASDDDSSPTLKLWD
   WD 6  253-292    -MS---------PVREFTGHQ--RGVIAMEWCPSD-SS-Y-LLTCAKDN---RTICWD
   WD 7  296-335    -AE---------IVAELPAGN--NWNFDVHWYP-KIPG-V-ISASSFDG---KIGIYN
   WD 8  347-388    NNF---------GTAPLKAPKWYKRPVGASFGF-G-GK-L-VSCHARAP---AKGTSS

   WD40 Template    TGE---------CLRTLSGHT--SGVTSVSFSP-D-GK-R-LVSGSEDG---TIKVWD