Input parameters:

  Query = AT4G02730.1 (Len=333)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G02730.1, Len=333):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPSGGNGTSNGVANANSTGNAGTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHR 80  
WD40-rpts      (____________WD 1___________)   (_________________WD 2________________)   (_____

Query       81 YEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTG 160 
WD40-rpts      ____________WD 3________________)     (________________WD 4________________)   (

Query      161 KCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGTCLKTLIDDKSPAVSFAKFSPNGKFILVATLDSTLKLS 240 
WD40-rpts      _________________WD 5________________)   (_________________WD 6_________________

Query      241 NYATGKFLKVYTGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAVISVSCHPVQNEISSSGN 320 
WD40-rpts      )   (__________________WD 7__________________)   (__________________WD 8________

Query      321 HLDKTIRIWKQDA 333 
WD40-rpts      _________)   

8 WD40-repeats found in QUERY=AT4G02730.1 (Len=333):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-29       3.07  241.47  0.03414       12.5%     22.07
  WD 2:  Seg  4    33-71      10.25  537.86  3.5e-06       42.5%     54.09
  WD 3:  Seg  8    75-113     10.13  533.30  4.0e-06       30.0%     55.58
  WD 4:  Seg 12   119-156     10.56  550.99  2.3e-06       47.5%     48.10
  WD 5:  Seg 15   160-198     10.87  563.84  1.6e-06       42.5%     57.84
  WD 6:  Seg 19   202-241      8.28  456.67  4.4e-05       37.5%     55.69
  WD 7:  Seg 23   245-286      8.93  483.68  1.9e-05       40.0%     56.27
  WD 8:  Seg 27   290-330      8.53  467.19  3.1e-05       37.5%     52.75

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-29     -----MPSGGNG-TSNGVANA--------NSTGNA--GTSGNVPI
   WD 2   33-71     YRHLKTLEGHTA-AISCVKFS---NDGNLLASASV--DKTMILWS
   WD 3   75-113    YSLIHRYEGHSS-GISDLAWS---SDSHYTCSASD--DCTLRIWD
   WD 4  119-156    -ECLKVLRGHTN-FVFCVNFN---PPSNLIVSGSF--DETIRIWE
   WD 5  160-198    GKCVRMIKAHSM-PISSVHFN---RDGSLIVSASH--DGSCKIWD
   WD 6  202-241    GTCLKTLIDDKSPAVSFAKFS---PNGKFILVATL--DSTLKLSN
   WD 7  245-286    GKFLKVYTGHTN-KVFCITSAFSVTNGKYIVSGSE--DNCVYLWD
   WD 8  290-330    RNILQRLEGHTD-AVISVSCH---PVQNEISSSGNHLDKTIRIWK

   WD40 Template    GECLRTLSGHTS-GVTSVSFS---PDGKRLVSGSE--DGTIKVWD