Input parameters:

  Query = AT4G03020.2 (Len=493)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G03020.2, Len=493):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFFGPSEFDADEMGYAMSRLEIESDLCDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVTKLKSSPHQRYSREVPGRHQL 80  
WD40-rpts                                                                                      

Query       81 PVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPWLVDQMDSRAYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWK 160 
WD40-rpts                               (______________________WD 1_____________________)(_____

Query      161 VQKDILAKSLRWTVTDTSLSPDQRNLVYASMSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTD 240 
WD40-rpts      _______________WD 2___________________)             (____________________WD 3___

Query      241 GREVVAGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRDKPAGVLVGHLEG 320 
WD40-rpts      ________________)   (_________________WD 4_________________)       (____________

Query      321 VTFIDSRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEVLRNYEWDYRWMDYPTEARDLKHPLDQSVSTYKGHSVLRTL 400 
WD40-rpts      _____WD 5________________)(_________________WD 6_________________)    (_________

Query      401 IRCYFSPAHSTGQKYIYTGSNDSSVYIYDLVSGDKVAVLKHHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGEAPI 480 
WD40-rpts      ________WD 7________________)   (_________________WD 8________________)         

Query      481 MSKKRVRRRHFYY 493 
WD40-rpts                   

8 WD40-repeats found in QUERY=AT4G03020.2 (Len=493):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   106-154      7.62  429.27  0.00010       20.0%     54.26
  WD 2:  Seg  8   155-199      7.83  438.18  7.7e-05       25.0%     52.62
  WD 3:  Seg 13   213-257      8.99  485.96  1.8e-05       37.5%     41.54
  WD 4:  Seg 16   261-300      8.76  476.64  2.3e-05       37.5%     55.74
  WD 5:  Seg 20   308-346      9.70  515.53  7.0e-06       37.5%     56.56
  WD 6:  Seg 24   347-386      3.52  260.26  0.01920        2.5%     -10.20
  WD 7:  Seg 25   391-429      6.82  396.27  0.00028       20.0%     45.93
  WD 8:  Seg 29   433-471      9.44  504.64  9.8e-06       30.0%     58.06

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  106-154    CCH-----MLSRYLPTKGPWLVDQMDSRAYVSQFSTD-GSLFIAGFQGSRIRIYN
   WD 2  155-199    VEK-----GWK----VQKDILAKSLRWTVTDTSLSPD-QRNLVYASMSPIVHIVD
   WD 3  213-257    EIHDGLDFSSD---------EDGGYSFGIFSVKFSTD-GREVVAGSSDDSIYVYD
   WD 4  261-300    -NR-----VSL---------RTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWD
   WD 5  308-346    -DK-----PAG---------VLVGHLEGVTFIDSRGD-GRYFISNGKDQTIKLWD
   WD 6  347-386    IRK-----MSS---------SAPARHEVLRNYEWDYR-WMDYPTEARDLKHPLDQ
   WD 7  391-429    -YK-----GHS---------VLRTLIRCYFSPAHSTG-QKYIYTGSNDSSVYIYD
   WD 8  433-471    -GD-----KVA---------VLKHHSSPVRDCNWHPY-YPTLISSSWDGDLVKWE

   WD40 Template    TGE-----CLR---------TLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD