Input parameters:

  Query = AT4G04940.1 (Len=910)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G04940.1, Len=910):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIRALASYRDYTFVAFGNEIAVF 80  
WD40-rpts             (_______________WD 1______________)                                      

Query       81 RRAHQVATWSKHVAKVDLLLVFGEHVLSLDVEGNMFIWAFKGIEEHLAPIGNLQLTGKFTPTSIVHPDTYLNKVLVGSQE 160 
WD40-rpts       (________________WD 2________________)         (_________________WD 3__________

Query      161 GPLQLWNINTKKMLYQFKGWGSSVTSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFSTDGRPLL 240 
WD40-rpts      ______)   (_________________WD 4________________)(___________________WD 5_______

Query      241 ASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMWIFDTNDGDPRLLRFRSGHSAPPLCI 320 
WD40-rpts      ____________)(___________________WD 6__________________)       (________________

Query      321 RFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHISRRAKKLRLKEEELKLKPVVSFDCAEIRERDWCNVVTCHMDTA 400 
WD40-rpts      _WD 7________________)                       (__________________WD 8____________

Query      401 EAYVWRLQNFVLGEHILKPCPENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYFDMSEKRRYAHDGEVIGV 480 
WD40-rpts      _____)       (_________________WD 9________________)           (________________

Query      481 ACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLVKIVYHRVNGLLATVADDFVIRLYDVVTLKMVREFRGHTDRI 560 
WD40-rpts      _WD10________________)(__________________WD11_________________)   (_____________

Query      561 TDLCFSEDGKWVISSSMDGSLRIWDVILAKQIDGVHVDVPITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVES 640 
WD40-rpts      ____WD12________________)   (_________________WD13________________)      (______

Query      641 YASGKDVVNVKLPSVSALTSSEADDDMDRQVLENSEALQASSFSISQKQIPELVTLSLLPKSQWQSLINLDIIKARNKPI 720 
WD40-rpts      __________WD14________________)                                                 

Query      721 EPPKKPEKAPFFLPSIPSLSGDILFKANDSEADGENEENNKKDQNSMKNFDALESPFSKHLKSSWDSKHFLDFTNYMKSL 800 
WD40-rpts                                                                                      

Query      801 SPSALDMELRMLEIIDEDVEEELIKRPEFILIGQLLDYFINEVSCKNDFEFMQAVVKLFLKIHGETIRCHPSLQEKAKKL 880 
WD40-rpts                                                                                      

Query      881 LETQSLVWQKMEKLFQSTRCIVTFLSNSQF 910 
WD40-rpts                                    

14 WD40-repeats found in QUERY=AT4G04940.1 (Len=910):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-42       3.55  261.25  0.01862       15.0%     46.87
  WD 2:  Seg  8    82-119      6.58  386.36  0.00039       20.0%     51.89
  WD 3:  Seg 13   129-167      6.11  367.13  0.00070       17.5%     53.64
  WD 4:  Seg 17   171-209      7.25  414.18  0.00016       32.5%     58.56
  WD 5:  Seg 21   210-253      6.31  375.11  0.00055       35.0%     57.42
  WD 6:  Seg 25   254-296      7.02  404.62  0.00022       25.0%     50.77
  WD 7:  Seg 29   304-342      7.66  430.96  9.7e-05       22.5%     51.07
  WD 8:  Seg 35   366-406      3.69  266.98  0.01561       20.0%     36.05
  WD 9:  Seg 39   414-452      6.60  387.24  0.00038       17.5%     52.25
  WD10:  Seg 43   464-502      7.28  415.20  0.00016       22.5%     49.55
  WD11:  Seg 46   503-543      5.16  327.75  0.00238       12.5%     57.73
  WD12:  Seg 50   547-585      9.97  526.62  5.0e-06       40.0%     58.73
  WD13:  Seg 54   589-627      4.45  298.50  0.00589       17.5%     57.48
  WD14:  Seg 58   634-671      3.57  262.08  0.01815       17.5%     49.68

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-42     -----------RAIGYITSTVPFSVQRLGTE-TFVTVSVG-KA-FQIYN
   WD 2   82-119    RA---H---QVATWSKHVAKVDLL--LVFGE-HVLSLDVE-GN-MFIWA
   WD 3  129-167    -P---I---GNLQLTGKFTPTSIVHPDTYLN-KVLVGSQE-GP-LQLWN
   WD 4  171-209    -K---K---MLYQFKGWGSSVTSCVSSPALD-VVAIGCAD-GK-IHVHN
   WD 5  210-253    IKLDEE---IVTFEHASRGAVTALSFSTDGRPLLASGGSF-GV-ISIWN
   WD 6  254-296    LN---KKRLQSVIRDAHDSSIISLNFLANEP-VLMSASAD-NS-LKMWI
   WD 7  304-342    -P---R---LLRFRSGHSAPPLCIRFYSNGR-HILSAGQD-RA-FRLFS
   WD 8  366-406    LK---E---EELKLKPVVSFDCAEIRERDWC-NVVTCHMDTAE-AYVWR
   WD 9  414-452    -E---H---ILKPCPENPTPIKACAISACGN-FAVVGTAG-GW-IERFN
   WD10  464-502    -D---M---SEKRRYAHDGEVIGVACDSTNT-LMISAGYH-GD-LKVWD
   WD11  503-543    FK---K--RELKSQWDVGCSLVKIVYHRVNG-LLATVADD-FV-IRLYD
   WD12  547-585    -L---K---MVREFRGHTDRITDLCFSEDGK-WVISSSMD-GS-LRIWD
   WD13  589-627    -A---K---QIDGVHVDVP-ITALSLSPNMD-VLATAHSD-QNGVYLWV
   WD14  634-671    -G---L---PSVESYASGKDVVNVKL-PSVS-ALTSSEAD-DD-MDRQV

   WD40 Template    TG---E---CLRTLSGHTSGVTSVSFSPDGK-RLVSGSED-GT-IKVWD