Input parameters:

  Query = AT4G07410.1 (Len=815)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G07410.1, Len=815):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLEYRCSSVDWKPSPVVALANSSDDSQVAAAREDGSLEIWLVSPGAVGWHCQLTIHGDPNSRISSLAWCCSPSIGLPSGR 80  
WD40-rpts      (__________________WD 1_________________)       (____________________WD 2_______

Query       81 LFSSSIDGSISEWDLFDLKQKIVLESIGISIWQMALAPISGFSSDVEGIKNGYLSEKSNDEEEIGSEEDGSDSDEFHEKS 160 
WD40-rpts      _____________)   (_________________WD 3________________)(____________________WD 

Query      161 EEEIDRILAAACDDGCVRLYRISNLEKLTYYRSLPRVSGRALSVTWSPDAKRIFSGSSDGLIRCWDATSCHEVYRITAGL 240 
WD40-rpts      4___________________)     (_________________WD 5_________________)   (__________

Query      241 GGLGSSSEICVWSLLSLRCSVLVSGDSTGTVQFWDSEHGTLLEAHSNHKGDVNTLAAAPSHNRVFSAGADGQVILYKLSG 320 
WD40-rpts      __________WD 6____________________)   (_________________WD 7________________)   

Query      321 STNGSQDLKPSSSQKWDYIGYVKAHTHDIRALTVAVPISREDPFPDDILPDKASRKHRKKGKPVDFTYHKWAHLGVPMLI 400 
WD40-rpts                     (_________________WD 8________________)(________________WD 9_____

Query      401 SAGDDAKLFAYSIQEFTKFSPHDICPAPQRIPMQMVHNSMFNKTSLLLVQGISTLDILRLNISSDSSGRASTKSLVRVKS 480 
WD40-rpts      ___________)                                                 (__________________

Query      481 RDARKIICSAISNTGSHFAYSDQIGPSLFELKKNEFTKCPWSVSRRRLPELPFAHSMIFSSDCSRLIIAGHDRRIYTIDI 560 
WD40-rpts      ____WD10_____________________)  (_____________________WD11____________________) 

Query      561 SSLELVYAFTPSREEHEGEAPTPKEPPITKLFTSSDGQWLAAINCFGDIYVFNLETQRQHWFISRLDGASVTAAGFHPWN 640 
WD40-rpts                    (_________________WD12________________)    (_________________WD13_

Query      641 NNALVISTSSNQVFAFDVEARQLGKWSLLNTYVLPKRYQEFPGEVLGLSFSPSPNSSSVIVYSSRAKCLIDFGKPVEEDE 720 
WD40-rpts      ________________)              (__________________WD14__________________)       

Query      721 EYDLPNGNLSKTLEGKLVNLGLKKGKGTNRKRRLDEYQLEGKSNERKNFEILPSNHPVLFVGHLSKNSILVIEKPWMDVV 800 
WD40-rpts                                                                                      

Query      801 KSLDNQPVDRHIFGT 815 
WD40-rpts                     

14 WD40-repeats found in QUERY=AT4G07410.1 (Len=815):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-41       8.23  454.53  4.7e-05       22.5%     52.17
  WD 2:  Seg  5    49-94       6.60  387.43  0.00037       35.0%     44.71
  WD 3:  Seg  9    98-136      6.71  392.03  0.00032        5.0%     55.95
  WD 4:  Seg 13   137-181      6.94  401.27  0.00024       10.0%     46.03
  WD 5:  Seg 17   187-226     10.74  558.33  1.9e-06       42.5%     45.52
  WD 6:  Seg 20   230-275      6.82  396.25  0.00028       27.5%     45.87
  WD 7:  Seg 24   279-317      8.99  486.02  1.8e-05       25.0%     55.39
  WD 8:  Seg 28   336-374      6.17  369.49  0.00065       10.0%     34.93
  WD 9:  Seg 31   375-412      4.65  306.84  0.00455       10.0%     37.16
  WD10:  Seg 37   462-510      5.14  326.87  0.00245       10.0%     54.11
  WD11:  Seg 41   513-559      7.79  436.54  8.1e-05       27.5%     47.84
  WD12:  Seg 46   575-613      7.36  418.85  0.00014       20.0%     42.17
  WD13:  Seg 49   618-657      5.54  343.69  0.00145       17.5%     57.52
  WD14:  Seg 54   672-713      3.02  239.57  0.03618       17.5%     24.63

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-41     MLE---------YRC-------SSVDWKPSP-------VVA-------LANSSDD-SQ---VAAAREDGSLEIWL
   WD 2   49-94     -WH----------CQ-------LTIHGDPNSRISSLAWCCS-------PSIGLPS-GR---LFSSSIDGSISEWD
   WD 3   98-136    -LK----------QK-------IVLESIGIS-------IWQ-------MALAPIS-GF---SSDVEGIKNGYLSE
   WD 4  137-181    KSN-----DEEEIGS-------EEDGSDSDE-------FHE-------KSEEEID-RI---LAAACDDGCVRLYR
   WD 5  187-226    KLT----------YY-------RSLPRVSGR-------ALS-------VTWSPDA-KR---IFSGSSDGLIRCWD
   WD 6  230-275    -CH----------EV-------YRITAGLGG-------LGSSSEICVWSLLSLRC-SV---LVSGDSTGTVQFWD
   WD 7  279-317    -GT----------LL-------EAHSNHKGD-------VNT-------LAAAPSH-NR---VFSAGADGQVILYK
   WD 8  336-374    -WD----------YI-------GYVKAHTHD-------IRA-------LTVAVPI-SR---EDPFPDDILPDKAS
   WD 9  375-412    --R----------KH-------RKKGKPVDF-------TYH-------KWAHLGV-PM---LISAGDDAKLFAYS
   WD10  462-510    ISSDSSGRASTKSLV-------RVKSRDARK-------IIC-------SAISNTG-SH---FAYSD-QIGPSLFE
   WD11  513-559    KNE----------FTKCPWSVSRRRLPELPF-------AHS-------MIFSSDC-SR---LIIAGHDRRIYTID
   WD12  575-613    -EH----------EG-------EAPTPKEPP-------ITK-------LFTSSDG-QW---LAAINCFGDIYVFN
   WD13  618-657    -RQ----------HW-------FISRLDGAS-------VTA-------AGFHPWNNNA---LVISTSSNQVFAFD
   WD14  672-713    -YV----------LP-------KRYQEFPGE-------VLG-------LSFSPSP-NSSSVIVYSSRAKCLIDFG

   WD40 Template    TGE----------CL-------RTLSGHTSG-------VTS-------VSFSPDG-KR---LVSGSEDGTIKVWD