Input parameters:
Query = AT4G15900.1 (Len=486)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT4G15900.1, Len=486):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPAPTTEIEPIEAQSLKKLSLKSLKRSLELFSPVHGQFPPPDPEAKQIRLSHKMKVAFGGVEPVVSQPPRQPDRINEQPG 80
WD40-rpts
Query 81 PSNALSLAAPEGSKSTQKGATESAIVVGPTLLRPILPKGLNYTGSSGKSTTIIPANVSSYQRNLSTAALMERIPSRWPRP 160
WD40-rpts (_________________WD 1_________________)
Query 161 EWHAPWKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDK 240
WD40-rpts (_________________WD 2________________) (_________________WD 3___________
Query 241 QVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQVVTG 320
WD40-rpts _____) (_________________WD 4________________) (_________________WD 5_______
Query 321 SHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPKENAFASASADNTKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVM 400
WD40-rpts _________) (_________________WD 6________________) (________________WD 7____
Query 401 VTGGDNGSIWFWDWKSGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIKMWKEDENATPETHPINFKPP 480
WD40-rpts ____________) (_________________WD 8________________)
Query 481 KEIRRF 486
WD40-rpts
8 WD40-repeats found in QUERY=AT4G15900.1 (Len=486):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 119-158 5.11 325.90 0.00252 17.5% 28.46
WD 2: Seg 5 166-204 9.20 494.55 1.3e-05 40.0% 53.85
WD 3: Seg 9 208-246 9.57 509.93 8.3e-06 30.0% 56.45
WD 4: Seg 13 250-288 9.87 522.35 5.7e-06 32.5% 55.10
WD 5: Seg 17 292-330 9.98 526.81 4.9e-06 42.5% 53.95
WD 6: Seg 21 334-372 9.01 486.91 1.7e-05 27.5% 52.51
WD 7: Seg 25 376-413 7.84 438.64 7.6e-05 27.5% 52.92
WD 8: Seg 30 425-463 8.08 448.44 5.6e-05 25.0% 37.52
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 119-158 GLNYTGSSGKSTTIIPANVSSYQRNLSTAALMERIPSRWP
WD 2 166-204 WKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTI-KIWD
WD 3 208-246 GVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQV-KCWD
WD 4 250-288 NKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVC-RVWD
WD 5 292-330 KMQIFALSGHDNTVCSVFTRPTDPQVVTGSHDTTI-KFWD
WD 6 334-372 GKTMSTLTHHKKSVRAMTLHPKENAFASASADNTK-KFSL
WD 7 376-413 EFCHNMLSQQKTIINAMAVNEDG-VMVTGGDNGSI-WFWD
WD 8 425-463 TIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTI-KMWK
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTI-KVWD