Input parameters:

  Query = AT4G18900.1 (Len=461)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G18900.1, Len=461):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRADELPSKEEIEMHKDSCKYFSNDTEEEETEDEEENGEVAHAKAVAEEFGKSSKSKNVSSSMELDDEVAEGLKELDMDN 80  
WD40-rpts                                                                                      

Query       81 YDEEDDGIEIFSSGRGDLYYKSNEMDPYLKRNDDHDDDSDDDPPILPTDLVIVCAMTDDKEANRLDVYVSEDTSHGSPNM 160 
WD40-rpts                                                                                      

Query      161 YNHHYRIIPAIPLCTAWLDCPLKGGERGNFLAVGSDGTPTIEIWDLDAWFDMLPCVQLGGQNKEGNYKQGSHTRSVLGLA 240 
WD40-rpts            (_________________WD 1________________)                 (_________________

Query      241 WNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEVLLSGSFDQTVVLKDGRQPSHSGFKWSVMS 320 
WD40-rpts      WD 2_________________)   (_________________WD 3_________________)   (___________

Query      321 DVESLAWDPHSEHSFVVSLEDGTVKGFDVRQASISASESNPSFTINGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLS 400 
WD40-rpts      ______WD 4_________________)          (_________________WD 5_________________)(_

Query      401 NNEPSCIATHNPNAGGLFFIAFSPDNPFLLAMGGVMGELKLWDTLSDTNVSSRYGSREVRP 461 
WD40-rpts      ___________________WD 6___________________)                  

6 WD40-repeats found in QUERY=AT4G18900.1 (Len=461):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   167-205      3.91  276.28  0.01172       20.0%     25.67
  WD 2:  Seg  5   223-262      6.89  399.35  0.00026       30.0%     44.79
  WD 3:  Seg  8   266-305      8.11  449.87  5.4e-05       35.0%     55.55
  WD 4:  Seg 12   309-348      6.67  390.22  0.00034       27.5%     50.77
  WD 5:  Seg 16   359-398      8.04  446.66  5.9e-05       37.5%     50.37
  WD 6:  Seg 20   399-443      7.49  423.87  0.00012       32.5%     58.37

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  167-205    II----PAIPLCTAWLD--CPLKGGERG-N-F-LAVGSDGTPTIEIWD
   WD 2  223-262    -K----EGNYKQGSHTRSVLGLAWNKEF-R-NILASASA-DKKVKVWD
   WD 3  266-305    -G----TCKITMEHHTKEVQAVAWNHYAPE-V-LLSGSF-DQTVVLKD
   WD 4  309-348    -P----SHSGFKWSVMSDVESLAWDPHS-E-HSFVVSLE-DGTVKGFD
   WD 5  359-398    -S----NPSFTINGHDEAATSVSYNISAPN-L-LATGSK-DRTVKLWD
   WD 6  399-443    LSNNEPSCIATHNPNAGGLFFIAFSPDN-PFL-LAMGGV-MGELKLWD

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSPDG-K-R-LVSGSE-DGTIKVWD