Input parameters:

  Query = AT4G18905.2 (Len=504)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G18905.2, Len=504):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MITAVSWIPKGNLKAVPDVAEPPSKEELKELIESGAFARNVEGSNEDEEEEIEEDGEEISEVDHAKAVAEALGKSSKSKA 80  
WD40-rpts                                                                                      

Query       81 VSSSMEVDEVSQGLKELDMDNYDEEDDEIELFSSGMGDLYYPSNEMDPYLKDVDDEDDEEDIDDTTVKPTDSVIICARNE 160 
WD40-rpts                        (______________WD 1______________)(_________________WD 2______

Query      161 DDVSHLEVYLYEESSGSPNMYVHHHIIIPEFPLCTAWLDCPLKGGEKGNFVAIGSKDTPTIEIWDLDVRDEVLPCIQLGG 240 
WD40-rpts      ___________)   (______________________WD 3______________________)               

Query      241 IEEMIVSKKKKSKKQKPVCASNSSISSSSMASSHTESVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKE 320 
WD40-rpts                              (_________________WD 4_________________)   (____________

Query      321 VQAVAWNHYAPEVLLSGSFDQTVVMKDGRQPSHSGFKWSVMSDVESLAWDPHCEHSFVVSLEDGTVKGFDIRAAQSGSDS 400 
WD40-rpts      _____WD 5_________________)   (_________________WD 6_________________)          

Query      401 DLNPTYTIQAHAQDRGVSSISYNISTPNLLATGSMDKSVKLWDLSNNEPSCIATHQPNAGAVFSISFAVDNPFLLAIGGS 480 
WD40-rpts       (__________________WD 7__________________)(____________________WD 8____________

Query      481 KGELHVWDTLLDANVARKYGSNRS 504 
WD40-rpts      _______)                

8 WD40-repeats found in QUERY=AT4G18905.2 (Len=504):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    99-132      4.17  287.02  0.00841       12.5%     23.05
  WD 2:  Seg  5   133-172      3.01  239.20  0.03659        2.5%     45.96
  WD 3:  Seg  8   176-225      4.89  316.52  0.00337       25.0%     33.81
  WD 4:  Seg 13   265-304      7.73  433.90  8.8e-05       30.0%     41.75
  WD 5:  Seg 16   308-347      8.13  450.62  5.3e-05       35.0%     51.65
  WD 6:  Seg 20   351-390      6.82  396.35  0.00028       27.5%     44.32
  WD 7:  Seg 23   402-443      6.24  372.59  0.00059       32.5%     51.04
  WD 8:  Seg 27   444-488      7.51  424.92  0.00012       32.5%     58.64

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   99-132    -----------MDNYD--EEDD----------EIELFSS-GMG-D-LYYPSNEM-D-----PYLKD
   WD 2  133-172    VD----D-----EDDE--EDID----------DTT-VKP-TDS-V-IICARNED-DVSHLEVYLYE
   WD 3  176-225    -G----SPNMYVHHHI--IIPEFPLCTAWLDCPLK-GGE-KGN-F-VAIGSKDTPT-----IEIWD
   WD 4  265-304    -I----SSSSMASSHT--ESVL----------GLA-WNK-EFR-NILASASADK-K-----VKVWD
   WD 5  308-347    -G----TCKITMEHHT--KEVQ----------AVA-WNHYAPE-V-LLSGSFDQ-T-----VVMKD
   WD 6  351-390    -P----SHSGFKWSVM--SDVE----------SLA-WDP-HCE-HSFVVSLEDG-T-----VKGFD
   WD 7  402-443    -L----NPTYTIQAHAQDRGVS----------SIS-YNISTPN-L-LATGSMDK-S-----VKLWD
   WD 8  444-488    LSNNEPSCIATHQPNA--GAVF----------SIS-FAV-DNPFL-LAIGGSKG-E-----LHVWD

   WD40 Template    TG----ECLRTLSGHT--SGVT----------SVS-FSP-DGK-R-LVSGSEDG-T-----IKVWD