Input parameters:

  Query = AT4G21130.1 (Len=479)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G21130.1, Len=479):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLEKKKGIGAKRRGKKSSIDHDPFLEEETEKRRKFNYDDDDDIESVESEEEGKVGEEVEDEFAHETVGEKRKRLAEDTL 80  
WD40-rpts                                                                                      

Query       81 NRIEEAKQREHEEDNEEDDDFRDSLVAKTLMQEQLEKSGRVRRANALRVQDLQSSDKFRVIVKHQHSVTGVALSDDDSRG 160 
WD40-rpts               (__________________WD 1__________________)   (_________________WD 2____

Query      161 FSVSKDGTILHWDVSSGKSDEYKWPSDEVLKSHGLKFQESWYTRHNKQSLALAVSSDGRYLATGGVDCHVHLWDIRTREH 240 
WD40-rpts      ____________)                      (_________________WD 3________________)   (__

Query      241 VQAFTGHCGIVSSLCFREGTAELFSGSYDGTLSIWNAEHRTYIESCFGHQSELLSIDALGRERVLSVGRDRTMQLYKVPE 320 
WD40-rpts      _______________WD 4________________)   (________________WD 5________________)(__

Query      321 STRLIYRASESNFECCCFVNSDEFLSGSDNGSIALWSILKKKPVFIVNNAHHVIADHDSVNHNCTPACSWVSSVAVCRGS 400 
WD40-rpts      _______________WD 6_________________)          (______________________WD 7______

Query      401 ELAASGAGNGCVRLWGVESGSSAIQPLYELPLPGFVNSLAFAKSGRFLIAGVGQEPRLGRWGCLKSAQNGVAIHPLRLS 479 
WD40-rpts      _______________)        (________________WD 8________________)                 

8 WD40-repeats found in QUERY=AT4G21130.1 (Len=479):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    90-131      5.78  353.46  0.00107       12.5%     36.68
  WD 2:  Seg  4   135-173      9.64  512.94  7.6e-06       40.0%     54.72
  WD 3:  Seg  8   196-234      7.30  416.21  0.00015       22.5%     46.31
  WD 4:  Seg 11   238-276      9.82  520.31  6.0e-06       35.0%     52.83
  WD 5:  Seg 15   280-317      6.63  388.49  0.00036       20.0%     48.91
  WD 6:  Seg 19   318-357      6.42  380.06  0.00047       25.0%     49.88
  WD 7:  Seg 24   368-416      7.92  441.81  6.9e-05       20.0%     41.47
  WD 8:  Seg 28   425-462      6.05  364.48  0.00076       17.5%     43.00

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   90-131    EH---------EEDNEE-DDDFRDSLVAKTLMQEQLEKSGRV-RRANALRVQD
   WD 2  135-173    -S---------D--KFR-VIVKHQHSVTGVALSDDDSRGFSV-SKDGTILHWD
   WD 3  196-234    -K---------F--QES-WYTRHNKQSLALAVSSDGRYLATG-GVDCHVHLWD
   WD 4  238-276    -R---------E--HVQ-AFTGHCGIVSSLCFREGTAELFSG-SYDGTLSIWN
   WD 5  280-317    -R---------T--YIE-SCFGHQSELLSIDALGRE-RVLSV-GRDRTMQLYK
   WD 6  318-357    VP---------E--STRLIYRASESNFECCCFVNSDE-FLSG-SDNGSIALWS
   WD 7  368-416    NNAHHVIADHDS--VNH-NCTPACSWVSSVAVCRGSELAASG-AGNGCVRLWG
   WD 8  425-462    Q--------------PL-YELPLPGFVNSLAFAKSGRFLIAGVGQEPRLGRWG

   WD40 Template    TG---------E--CLR-TLSGHTSGVTSVSFSPDGKRLVSG-SEDGTIKVWD