Input parameters:

  Query = AT4G22910.1 (Len=483)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G22910.1, Len=483):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEEDPTASNVITNSNSSSMRNLSPAMNTPVVSLESRINRLINANQSQSPSPSSLSRSIYSDRFIPSRSGSNFALFDLSP 80  
WD40-rpts                                                                                      

Query       81 SPSKDGKEDGAGSYATLLRAAMFGPETPEKRDITGFSSSRNIFRFKTETHRSLNSFSPFGVDDDSPGVSHSGPVKAPRKV 160 
WD40-rpts                                                       (_________________WD 1_________

Query      161 PRSPYKVLDAPALQDDFYLNLVDWSAQNVLAVGLGNCVYLWNACSSKVTKLCDLGAEDSVCSVGWALRGTHLAVGTSTGK 240 
WD40-rpts      ________)(______________WD 2_____________)(___________________WD 3______________

Query      241 VQIWDASRCKRTRTMEGHRLRVGALAWGSSVLSSGSRDKSILQRDIRCQEDHVSKLAGHKSEVCGLKWSYDNRELASGGN 320 
WD40-rpts      ____)   (________________WD 4_______________)    (_________________WD 5_________

Query      321 DNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSPHVHGLLASGGGTADRCIRFWNTTTNTHLSSIDTCSQVCNLAWSKNVNE 400 
WD40-rpts      _______)   (__________________WD 6__________________)   (_________________WD 7__

Query      401 LVSTHGYSQNQIIVWKYPTMSKIATLTGHTYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGSSFFGRT 480 
WD40-rpts      _______________)   (_________________WD 8________________)                      

Query      481 TIR 483 
WD40-rpts         

8 WD40-repeats found in QUERY=AT4G22910.1 (Len=483):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   130-169      3.86  273.92  0.01260       20.0%     18.51
  WD 2:  Seg  4   170-202      3.18  246.18  0.02956        2.5%     41.95
  WD 3:  Seg  7   203-245      7.37  419.11  0.00014       27.5%     53.84
  WD 4:  Seg 11   249-285      6.57  386.06  0.00039       30.0%     54.44
  WD 5:  Seg 15   290-328      9.14  492.31  1.4e-05       32.5%     52.29
  WD 6:  Seg 19   332-373      7.35  418.14  0.00014       27.5%     44.24
  WD 7:  Seg 23   377-416      5.33  334.76  0.00192       27.5%     48.14
  WD 8:  Seg 27   420-458      9.80  519.47  6.2e-06       37.5%     55.27

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  130-169    -HRSLNSFS---PFGVDDDSPGVSHSGPVKAP---RKVPRSPYKVLD
   WD 2  170-202    -------AP---ALQDDFYLNLVDWSAQNVLA---VGLGNC-VYLWN
   WD 3  203-245    ACSSKVTKLCDLGAEDSVCSVGWALRGTHLAV---GTSTGK-VQIWD
   WD 4  249-285    -CKRTRTME---GHRLRVGALAWG--SSVLSS---GSRDKS-ILQRD
   WD 5  290-328    -EDHVSKLA---GHKSEVCGLKWSYDNRELAS---GGNDNR-LFVWN
   WD 6  332-373    -TQPVLKYS---EHTAAVKAIAWSPHVHGLLASGGGTADRC-IRFWN
   WD 7  377-416    -NTHLSSID---TC-SQVCNLAWSKNVNELVS-THGYSQNQ-IIVWK
   WD 8  420-458    -MSKIATLT---GHTYRVLYLAVSPDGQTIVT---GAGDET-LRFWN

   WD40 Template    TGECLRTLS---GHTSGVTSVSFSPDGKRLVS---GSEDGT-IKVWD