Input parameters:

  Query = AT4G29730.1 (Len=487)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G29730.1, Len=487):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESEAAATVQATRPRRAPRTPVTAILTDKRRRKPKSNNESQLPFLLQQSQKATVDDTYSQWKTLLPILYDSFVNHTLVWP 80  
WD40-rpts                                                     (__________________________WD 1__

Query       81 SLSCRWGPQLEQAGSKTQRLYLSEQTNGSVPNTLVIANCETVNRQLNEKAHSPFVKKYKTIIHPGEVNRIRELPQNSKIV 160 
WD40-rpts      _______________________)                (________________________WD 2___________

Query      161 ATHTDSPDILIWNTETQPDRYAVLGAPDSRPDLLLIGHQDDAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITMAGSDS 240 
WD40-rpts      ____________)               (_________________WD 3_________________)(___________

Query      241 KSPGSSFKQTGEGSDKTGGPSVGPRGIYNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADL 320 
WD40-rpts      ___WD 4_____________)(_________________WD 5_________________)     (_____________

Query      321 HCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVG 400 
WD40-rpts      ____WD 6_________________)         (_________________WD 7_________________)     

Query      401 KKSERATKTPDGLFFQHAGHRDKVVDFHWSLLNPWTIVSVSDNCESIGGGGTLQIWRMSDLIYRPEDEVLTELEKFKSHV 480 
WD40-rpts                (_____________________WD 8____________________)                       

Query      481 FTCTSKS 487 
WD40-rpts             

8 WD40-repeats found in QUERY=AT4G29730.1 (Len=487):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    48-104      6.05  364.61  0.00076       15.0%     18.16
  WD 2:  Seg  5   121-173      5.43  338.76  0.00169       17.5%     54.80
  WD 3:  Seg  9   189-228      6.60  387.13  0.00038       20.0%     49.28
  WD 4:  Seg 13   229-261      5.88  357.36  0.00095       15.0%      3.65
  WD 5:  Seg 14   262-301      6.55  385.38  0.00040       25.0%     51.35
  WD 6:  Seg 18   307-346      7.89  440.54  7.2e-05       25.0%     50.63
  WD 7:  Seg 22   356-395      8.11  449.79  5.4e-05       35.0%     53.90
  WD 8:  Seg 26   411-457      4.79  312.70  0.00380       25.0%     50.12

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   48-104    QSQ------------KATVDDTYSQWKTLLPILYDSFVNHTLVWP-SLSCRW-GPQL-EQAGSKT-------QRLYLSE
   WD 2  121-173    TVNRQLNEKAHSPFVK-----------KYK------TIIHPGEVN-RIRELPQNSKI-VATHTDS-------PDILIWN
   WD 3  189-228    -SR------------P-----------DLL------LIGHQDDAEFALAMCP-TEPF-VLSGGKD-------KSVILWN
   WD 4  229-261    ------------------------------------IQDHITMAG-SDSKSP-GSSF-KQTGEGS-------DKTGGPS
   WD 5  262-301    -VG------------P-----------RGI------YNGHKDTVE-DVAFCPSSAQE-FCSVGDD-------SCLMLWD
   WD 6  307-346    -SP------------A-----------MKV------EKAHDADLH-CVDWNPHDNNL-ILTGSAD-------NTVRVFD
   WD 7  356-395    -GS------------P-----------VYK------FEGHRAAVL-CVQWSP-DKSSVFGSSAED-------GLLNIWD
   WD 8  411-457    -DG------------L-----------FFQ------HAGHRDKVV-DFHWSLLNPWT-IVSVSDNCESIGGGGTLQIWR

   WD40 Template    TGE------------C-----------LRT------LSGHTSGVT-SVSFSP-DGKR-LVSGSED-------GTIKVWD