Input parameters:

  Query = AT4G32551.1 (Len=931)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G32551.1, Len=931):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIE 80  
WD40-rpts                                                                                      

Query       81 TQMIKAREQQLQQSQHPQVSQQQQQQQQQQIQMQQLLLQRAQQQQQQQQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQP 160 
WD40-rpts                                                                                      

Query      161 PSQQQQQQSTPQHQQQPTPQQQPQRRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVKMPTQRESLDEAA 240 
WD40-rpts                                                                                      

Query      241 MKRFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSEINPVLTPRTAVPEGSLIG 320 
WD40-rpts                                                           (___________________WD 1___

Query      321 IPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQSFHQLNMLTPQHQQQLMLAQQNLNSQSVSEENRRLKMLLNN 400 
WD40-rpts      ________________)                                                               

Query      401 RSMTLGKDGLGSSVGDVLPNVGSSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNP 480 
WD40-rpts            (______________________WD 2______________________)  (_________________WD 3

Query      481 QPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHT 560 
WD40-rpts      ________________)          (_______________WD 4_______________)                 

Query      561 PGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLADMDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFT 640 
WD40-rpts                                      (__________________WD 5__________________)      

Query      641 FTEVNSVRASTTKVTCCHFSSDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVW 720 
WD40-rpts      (_________________WD 6________________)   (_________________WD 7________________

Query      721 DADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYKGGSTQIRFQPRVGKYLAASSANLV 800 
WD40-rpts      )    (_________________WD 8_________________)   (_______________WD 9____________

Query      801 NVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVI 880 
WD40-rpts      ___)   (________________WD10________________)      (_________________WD11_______

Query      881 GCYQSLELWNMSENKTMTLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931 
WD40-rpts      _________)(__________________WD12_________________)

12 WD40-repeats found in QUERY=AT4G32551.1 (Len=931):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   294-337      4.29  291.67  0.00728       25.0%      6.45
  WD 2:  Seg  4   407-456      4.41  296.92  0.00619       22.5%      3.20
  WD 3:  Seg  5   459-497      6.93  400.77  0.00025        7.5%     21.95
  WD 4:  Seg  7   508-543      6.57  385.97  0.00039        7.5%     36.08
  WD 5:  Seg 11   593-634      5.63  347.33  0.00130       15.0%     27.70
  WD 6:  Seg 14   641-679      8.62  470.78  2.8e-05       30.0%     55.11
  WD 7:  Seg 18   683-721     10.09  531.30  4.3e-06       40.0%     56.40
  WD 8:  Seg 22   726-765      8.50  465.86  3.3e-05       40.0%     51.89
  WD 9:  Seg 26   769-804      6.83  396.61  0.00028       25.0%     49.25
  WD10:  Seg 30   808-845      8.40  461.83  3.7e-05       37.5%     51.09
  WD11:  Seg 34   852-890      8.30  457.69  4.2e-05       25.0%     56.91
  WD12:  Seg 38   891-931      8.31  457.92  4.2e-05       30.0%     52.57

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  294-337    -GS-AVDIKSEINPVLTPRTAVP-EGSLIGIPGSNQGSN----NLTLK-----------GWP
   WD 2  407-456    -KD-GLGSSVGDVLPNVGSSLQP-GGSLLP-----RGDT----DMLLKLKMALLQQQQQNQQ
   WD 3  459-497    -GG-NPPQPQPQPQPLNQLALTN-PQPQSS-----NHSI----HQQEK-----------LGG
   WD 4  508-543    -----SNSFRGNEQVLKNQSGRK-RKQPVS-----SSGP----ANSSG-----------TAN
   WD 5  593-634    SPS---NQLADMDRFVEDGSLDD-NVESFL-----SQEDGDQRDAVTR-----------CMD
   WD 6  641-679    -FT-EVNSVRASTTKVTCCHFSS-DGKMLA-----SAGH----DKKAV-----------LWY
   WD 7  683-721    -MK-PKTTLEEHTAMITDIRFSP-SQLRLA-----TSSF----DKTVR-----------VWD
   WD 8  726-765    -GY-SLRTFMGHSSMVTSLDFHPIKDDLIC-----SCDN----DNEIR-----------YWS
   WD 9  769-804    -GS-CTRVYKGG---STQIRFQP-RVGKYL-----AASS----ANLVN-----------VLD
   WD10  808-845    -QA-IRHSLQGHANPINSVCWDP-SGDFLA-----SVSE----D-MVK-----------VWT
   WD11  852-890    -GE-CVHELSCNGNKFQSCVFHP-AYPSLL-----VIGC----YQSLE-----------LWN
   WD12  891-931    MSENKTMTLPAHEGLITSLAVST-ATGLVA-----SASH----DKLVK-----------LWK

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSP-DGKRLV-----SGSE----DGTIK-----------VWD