Input parameters:

  Query = AT4G32551.2 (Len=969)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G32551.2, Len=969):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIE 80  
WD40-rpts                                                                                      

Query       81 TQMIKAREQQLQQSQHPQVSQQQQQQQQQQIQMQQLLLQRAQQQQQQQQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQP 160 
WD40-rpts                                                                                      

Query      161 PSQQQQQQSTPQHQQQPTPQQQPQRRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVKMPTQRESLDEAA 240 
WD40-rpts                                                                                      

Query      241 MKRFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSEINPVLTPRTAVPEGSLIG 320 
WD40-rpts                                                           (___________________WD 1___

Query      321 IPGRFAVLSVSFQLVKRVKCSISTSAHKNLLRINDWFPVSGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQSFH 400 
WD40-rpts      _______________)_________________WD 2_________________)                         

Query      401 QLNMLTPQHQQQLMLAQQNLNSQSVSEENRRLKMLLNNRSMTLGKDGLGSSVGDVLPNVGSSLQPGGSLLPRGDTDMLLK 480 
WD40-rpts                                            (________________________WD 3_____________

Query      481 LKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNPQPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQS 560 
WD40-rpts      ___________)    (_________________WD 4________________)       (_________________

Query      561 GRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLADMD 640 
WD40-rpts      WD 5________________)  (_________________WD 6________________)        (_________

Query      641 RFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFSSDGKMLASAGHDKKAVLWYTDT 720 
WD40-rpts      _________WD 7__________________)      (_________________WD 8________________)   

Query      721 MKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIR 800 
WD40-rpts      (_________________WD 9________________)    (_________________WD10_______________

Query      801 YWSINNGSCTRVYKGGSTQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSEDMVK 880 
WD40-rpts      __)   (_______________WD11_______________)   (________________WD12______________

Query      881 VWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSENKTMTLPAHEGLITSLAVSTATGLVASAS 960 
WD40-rpts      __)      (_________________WD13________________)(__________________WD14_________

Query      961 HDKLVKLWK 969 
WD40-rpts      ________)

14 WD40-repeats found in QUERY=AT4G32551.2 (Len=969):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   294-336      3.13  244.12  0.03149       15.0%     18.21
  WD 2:  Seg  4   336-375      7.23  413.45  0.00017       12.5%      6.63
  WD 3:  Seg  5   439-492      4.79  312.61  0.00381       27.5%     17.84
  WD 4:  Seg  7   497-535      7.09  407.60  0.00020        7.5%     23.97
  WD 5:  Seg  9   543-581      7.27  414.79  0.00016       10.0%     28.06
  WD 6:  Seg 11   584-622      3.43  256.20  0.02175       12.5%     -5.65
  WD 7:  Seg 14   631-672      5.23  330.50  0.00219       15.0%     15.79
  WD 8:  Seg 16   679-717      8.68  473.30  2.6e-05       30.0%     53.07
  WD 9:  Seg 20   721-759     10.11  532.48  4.1e-06       40.0%     51.55
  WD10:  Seg 24   764-803      8.48  464.75  3.4e-05       40.0%     54.65
  WD11:  Seg 28   807-842      6.82  396.45  0.00028       25.0%     53.35
  WD12:  Seg 32   846-883      8.44  463.34  3.5e-05       37.5%     49.99
  WD13:  Seg 36   890-928      8.25  455.48  4.5e-05       25.0%     56.41
  WD14:  Seg 40   929-969      8.26  456.01  4.4e-05       30.0%     50.37

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  294-336    -GS-AVDIKSEINPVLTPR------TAVP-EGSLIGI----PGRFAVLSVS-----FQLVK
   WD 2  336-375    KRV-KCSISTSAHKNLLRI------NDWF-PVSGSNQ----GSNNLTLKGW---------P
   WD 3  439-492    -RS-MTLGKDGLGSSVGDVLPNVGSSLQP-GGSLLPR----GDTDMLLKLKMALLQQQQQN
   WD 4  497-535    -GG-NPPQPQPQPQPLNQL------ALTN-PQPQSSN----HSIHQQEKLG---------G
   WD 5  543-581    -GS-ISNSFRGNEQVLKNQ------SGRK-RKQPVSS----SGPANSSGTA---------N
   WD 6  584-622    -GP-SPSSAPSTPSTHTPG------DVIS-MPNLPHS----GGSSKSMMMF---------G
   WD 7  631-672    SPS---NQLADMDRFVEDG------SLDD-NVESFLSQEDGDQRDAVTRCM---------D
   WD 8  679-717    -FT-EVNSVRASTTKVTCC------HFSS-DGKMLAS----AGHDKKAVLW---------Y
   WD 9  721-759    -MK-PKTTLEEHTAMITDI------RFSP-SQLRLAT----SSFDKTVRVW---------D
   WD10  764-803    -GY-SLRTFMGHSSMVTSL------DFHPIKDDLICS----CDNDNEIRYW---------S
   WD11  807-842    -GS-CTRVYKGG---STQI------RFQP-RVGKYLA----ASSANLVNVL---------D
   WD12  846-883    -QA-IRHSLQGHANPINSV------CWDP-SGDFLAS----VSED-MVKVW---------T
   WD13  890-928    -GE-CVHELSCNGNKFQSC------VFHP-AYPSLLV----IGCYQSLELW---------N
   WD14  929-969    MSENKTMTLPAHEGLITSL------AVST-ATGLVAS----ASHDKLVKLW---------K

   WD40 Template    TGE-CLRTLSGHTSGVTSV------SFSP-DGKRLVS----GSEDGTIKVW---------D