Input parameters:

  Query = AT4G32990.1 (Len=328)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G32990.1, Len=328):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVMDKNLGLEEVQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQSSLTRSWTCKLGHRLGSFDGNTCVWENFAT 80  
WD40-rpts           (___________________WD 1___________________)                               

Query       81 DSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEEDDEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYD 160 
WD40-rpts       (_________________WD 2________________)        (_________________WD 3__________

Query      161 NTIKIWCSEDEDGDYNCVQTLSELNNGHSSTVWSISFNAAGDKMVTCSDDLAVKIWKTDISRMQSGEGYVPWTHVCTLSG 240 
WD40-rpts      ______)              (_______________WD 4_______________)              (________

Query      241 FHDRTIYSVHWSRDGVIASGAGDDTIQLFVDSDSDSVDGPSYKLLVKKEKAHEMDVNSVQWAPDKESRLLASASDDKMVK 320 
WD40-rpts      _________WD 5________________)(________________________WD 6_____________________

Query      321 IWKLASEP 328 
WD40-rpts      __)     

6 WD40-repeats found in QUERY=AT4G32990.1 (Len=328):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     6-49       8.35  459.77  4.0e-05       32.5%     50.70
  WD 2:  Seg  9    82-120      9.78  518.78  6.3e-06       32.5%     53.04
  WD 3:  Seg 13   129-167      9.08  489.64  1.6e-05       35.0%     50.89
  WD 4:  Seg 18   182-217      9.20  494.55  1.3e-05       32.5%     44.49
  WD 5:  Seg 21   232-270      6.11  367.18  0.00070       37.5%     53.62
  WD 6:  Seg 25   271-323      7.67  431.31  9.6e-05       30.0%     52.16

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-49     KNLGLE-----------EVQKLEG-HTDRVWNVAWNPA--ADGVIASCSADKTVRIWE
   WD 2   82-120    -S---E-----------SVSVLRG-HESEVKSVSWNAS--GSL-LATCGRDKSVWIWE
   WD 3  129-167    -F---D-----------TIAVLTG-HSEDVKMVLWHPT--MDV-LFSCSYDNTIKIWC
   WD 4  182-217    ------------------SELNNG-HSSTVWSISFNAA--GDK-MVTCSDDLAVKIWK
   WD 5  232-270    -W---T-----------HVCTLSGFHDRTIYSVHWSRD--G-V-IASGAGDDTIQLFV
   WD 6  271-323    DS---DSDSVDGPSYKLLVKKEKA-HEMDVNSVQWAPDKESRL-LASASDDKMVKIWK

   WD40 Template    TG---E-----------CLRTLSG-HTSGVTSVSFSPD--GKR-LVSGSEDGTIKVWD