Input parameters:

  Query = AT4G34460.3 (Len=347)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G34460.3, Len=347):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVSELKERHAVATETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTLQGHTGKVYSLDWTPERNRI 80  
WD40-rpts                                                            (_________________WD 1____

Query       81 VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVS 160 
WD40-rpts      ____________)   (_________________WD 2________________)          (______________

Query      161 CCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRA 240 
WD40-rpts      ___WD 3_________________)          (________________WD 4________________)    (__

Query      241 VRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQVYQPHGDGENGPVTSIAFSVSGRLLFAGYASNNTCY 320 
WD40-rpts      _______________WD 5________________)   (___________________WD 6_________________

Query      321 VWDTLLGEFSCRLYWIWDYSRIHTGIE 347 
WD40-rpts      __)                        

6 WD40-repeats found in QUERY=AT4G34460.3 (Len=347):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    55-93      10.51  548.87  2.5e-06       45.0%     56.69
  WD 2:  Seg  7    97-135      9.07  489.48  1.6e-05       17.5%     55.12
  WD 3:  Seg 11   146-185      7.84  438.50  7.7e-05       30.0%     52.97
  WD 4:  Seg 16   196-233      8.18  452.52  5.0e-05       45.0%     45.99
  WD 5:  Seg 19   238-276     10.39  543.92  2.9e-06       42.5%     49.15
  WD 6:  Seg 23   280-323      7.48  423.81  0.00012       40.0%     57.87

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-93     -LVCCRTLQGHTGK----VYSLDWTP-ERNRIVSA-SQDGRLIVWN
   WD 2   97-135    -SQKTHAIKLPCAW----VMTCAFSP-NGQSVACG-GLDSVCSIFS
   WD 3  146-185    -VPVSRMLTGHRGY----VSCCQYVPNEDAHLITS-SGDQTCILWD
   WD 4  196-233    GGE---FQSGHTAD----VLSVSISGSNPNWFISG-SCDSTARLWD
   WD 5  238-276    -SRAVRTFHGHEGD----VNTVKFFP-DGYRFGTG-SDDGTCRLYD
   WD 6  280-323    -GHQLQVYQPHGDGENGPVTSIAFSV-SGRLLFAGYASNNTCYVWD

   WD40 Template    TGECLRTLSGHTSG----VTSVSFSP-DGKRLVSG-SEDGTIKVWD